View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2349_low_8 (Length: 313)
Name: NF2349_low_8
Description: NF2349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2349_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 76 - 233
Target Start/End: Original strand, 9716954 - 9717111
Alignment:
| Q |
76 |
agactccaaacaacaggaagcatcacacattacctagaaaaatagtcgtgcaagactaaattctaccggccaaaatagtttagccaataggactagtatt |
175 |
Q |
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| T |
9716954 |
agactccaaacaacgggaagcatcacacattacctagaaaaatagtcgtgcaagactaaattctaccggccaaaatagtttagccaataggactagtatt |
9717053 |
T |
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| Q |
176 |
gcttacaaatatcacacttatacatttccattgacatacttcttcaatcaaacactta |
233 |
Q |
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| T |
9717054 |
gcttacaaatatcacacttatacatttcctttgacatacttcttcaatcaaacactta |
9717111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 9717415 - 9717494
Alignment:
| Q |
234 |
atgttttgcaatttattcttttacttcacattttatttatgcatttcctagtttagtaacttaccaaaactcaactatgt |
313 |
Q |
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| T |
9717415 |
atgttttgcaatttattcttttacttcacattttatttatgcatttcctagtttagtaacttaccaaaaatcaactatgt |
9717494 |
T |
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