View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2350_high_2 (Length: 315)
Name: NF2350_high_2
Description: NF2350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2350_high_2 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 299
Target Start/End: Original strand, 7331709 - 7331996
Alignment:
| Q |
12 |
aagaaataatcaaacagaacttcagaagttaaataaccctagaactattacccttttcaccccatcttcagcagctccagaccacaaaaagaacccgagc |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7331709 |
aagaaataatcaaacagaacttcagaagttaaataaccctagaactattacccttttcaccccatcttcagcagctccagaccacaaaaagaacccgagc |
7331808 |
T |
|
| Q |
112 |
aattctgattgtgaataactattctattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattaagttatacggagtatttcgaggct |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7331809 |
aattctgattgtgaataactattctattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattaagttatacggagtatttcgaggct |
7331908 |
T |
|
| Q |
212 |
taaggtgcaattaaaattataatattgagacatcataagacaacacacatatggaaaggaacttcactacaatctcagacactatatc |
299 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7331909 |
taaggtgcaattaaaattataatattgagacatcataagacaacacacatatggaaaggaacttcactacaatctcagacactatatc |
7331996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 2504400 - 2504120
Alignment:
| Q |
10 |
agaagaaataatcaaacagaacttcagaagttaaataaccctagaactattacccttttcaccccatcttcagca--gctccagaccacaaaaagaaccc |
107 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |||||| ||||| ||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
2504400 |
agaagaaataatcaaacagaacttaagaagttaaattaccctataactactacccttttcaccccatcttcagcaaagctccacaccacaaaaagaaccc |
2504301 |
T |
|
| Q |
108 |
gagcaattctgattgtgaataactattctattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattaagttatacggagtatttcga |
207 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||| || |||||| | |||||| || |
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| T |
2504300 |
gagcaattctgattgtgaataacccttctattgaaacaaacaaacacagccaacctg--aaagagacatttcaactaatatgttataaagtgtattttga |
2504203 |
T |
|
| Q |
208 |
ggcttaaggtgcaattaaaattataatattgagacatcataagacaacacacatatggaaaggaacttcactacaatctcaga |
290 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||||||| |
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| T |
2504202 |
ggcttaaggtgcacctaaaattaaaatattgagacattataaggcaacacacatattgaaaggaacttcgctacaatctcaga |
2504120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 230
Target Start/End: Original strand, 2648948 - 2649171
Alignment:
| Q |
10 |
agaagaaataatcaaacagaacttcagaagttaaataaccctagaactattacccttttcac-cccatcttcagca--gctccagaccacaaaaagaacc |
106 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |
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| T |
2648948 |
agaagaaataatcaaacagaacttaagaagttaaataaccctataactattacccttttcaatcccatctttagcaaagctccagaccacaaaaagaacc |
2649047 |
T |
|
| Q |
107 |
cgagcaattctgattgtgaataactattctattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattaagttatacggagtatttcg |
206 |
Q |
| |
|
||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| || | |
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| T |
2649048 |
cgagcaattctgattttgaataacccttccattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattacgtcataaggagtactttg |
2649147 |
T |
|
| Q |
207 |
aggcttaaggtgcaattaaaatta |
230 |
Q |
| |
|
|||||||||||||||||||||||| |
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| T |
2649148 |
aggcttaaggtgcaattaaaatta |
2649171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 10 - 296
Target Start/End: Original strand, 2641455 - 2641750
Alignment:
| Q |
10 |
agaagaaataatcaaacagaacttcagaagttaaataaccctagaactattacccttttcac-cccatcttcagca--gctccagaccacaaaaagaacc |
106 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |
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| T |
2641455 |
agaagaaataatcaaacagaacttaagaagttaaataaccctataactattacccttttcaatcccatctttagcaaagctccagaccacaaaaagaacc |
2641554 |
T |
|
| Q |
107 |
cgagcaattctgattgtgaataactattctattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattaagttatacggagtatttcg |
206 |
Q |
| |
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| ||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| || | |
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| T |
2641555 |
caagcaattctgattttgaataacccttccattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattacgtcataaggagtactttg |
2641654 |
T |
|
| Q |
207 |
aggcttaaggtgcaattaaaatt------ataatattgagacatcataagacaacacacatatggaaaggaacttcactacaatctcagacactat |
296 |
Q |
| |
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||||||||||||||||||||||| | |||| |||||||| ||||| | || | ||||||||||| ||||||||| |||||||| ||||| |
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| T |
2641655 |
aggcttaaggtgcaattaaaattacaaacacaatagtgagacattataaggtagaactcgtatggaaaggatcttcactaccatctcagaaactat |
2641750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 133 - 299
Target Start/End: Complemental strand, 2495881 - 2495713
Alignment:
| Q |
133 |
ttctattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattaagttatacggagtatttcgaggcttaaggtgcaattaaaattata |
232 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||| ||||||| | |||||| | ||||| ||||||| ||||||||||||||| | | |
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|
| T |
2495881 |
ttctattgaaaggaacaaacacaaccaacctgaaaaagagacatttcaactatgatgttata-agtctattttgaggcttcaggtgcaattaaaataaaa |
2495783 |
T |
|
| Q |
233 |
atattgagacatcataagaca---acacacatatggaaaggaacttcactacaatctcagacactatatc |
299 |
Q |
| |
|
|||||||||||| ||||| || ||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
2495782 |
atattgagacattataaggcaaacacacacatatggaaatgaacttccttacaatctcagacactatatc |
2495713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 124 - 299
Target Start/End: Complemental strand, 2634314 - 2634142
Alignment:
| Q |
124 |
gaataactattctattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattaagttatacggagtatttcgaggcttaaggtgcaatt |
223 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||| ||||||||||||||||| |||||| | |||||| | ||||| ||||||| ||||||||| |
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|
| T |
2634314 |
gaataacccttctattgaaacgaacaaacacaaccagcctgaaaaagagacatttgaactatgatgttataagtc-tattttgaggcttgaggtgcaata |
2634216 |
T |
|
| Q |
224 |
aaaattataatattgagacatcataagacaacacacatatggaaaggaacttcactacaatctcagacactatatc |
299 |
Q |
| |
|
||||||| ||||||||||||| ||||| || ||||||||||||| |||||||| |||||||||||| | |||||| |
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|
| T |
2634215 |
aaaattaaaatattgagacattataaggca--acacatatggaaatgaacttcaatacaatctcagaaattatatc |
2634142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 299
Target Start/End: Original strand, 675063 - 675227
Alignment:
| Q |
133 |
ttctattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattaagttatacggagtatttcgaggcttaaggtgca-attaaaattat |
231 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||| |||||| |||||||| | ||||| || |||| ||||||| | ||||||| |
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|
| T |
675063 |
ttctattgaaatgaacaaacacgaccaacctgaaaaagagacatttcaactacgaagttata-agtctattttgaagcttgaggtgcacacaaaaattaa |
675161 |
T |
|
| Q |
232 |
aatattgagacatcataagacaacacacatatggaaaggaacttcactacaatctcagacactatatc |
299 |
Q |
| |
|
|||||||||||| ||||| || |||||| |||||| || |||||||||||||||| ||||||||| |
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|
| T |
675162 |
aatattgagacaatataaggca--acacatgtggaaacaaaattcactacaatctcaggcactatatc |
675227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 299
Target Start/End: Original strand, 749659 - 749823
Alignment:
| Q |
133 |
ttctattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattaagttatacggagtatttcgaggcttaaggtgca-attaaaattat |
231 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||| |||||| |||||||| | ||||| || |||| ||||||| | ||||||| |
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|
| T |
749659 |
ttctattgaaatgaacaaacacgaccaacctgaaaaagagacatttcaactacgaagttata-agtctattttgaagcttgaggtgcacacaaaaattaa |
749757 |
T |
|
| Q |
232 |
aatattgagacatcataagacaacacacatatggaaaggaacttcactacaatctcagacactatatc |
299 |
Q |
| |
|
|||||||||||| ||||| || |||||| |||||| || |||||||||||||||| ||||||||| |
|
|
| T |
749758 |
aatattgagacaatataaggca--acacatgtggaaacaaaattcactacaatctcaggcactatatc |
749823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 294
Target Start/End: Complemental strand, 2447114 - 2446962
Alignment:
| Q |
141 |
aaacaaacaaacacagccaacctgaaaaagagacattccaactattaagttatacggagtatttcgaggcttaaggtgcaattaaaattataatattgag |
240 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| |||| ||||||| | |||||| | ||||| ||||||| |||||||| |||| | | ||||| | | |
|
|
| T |
2447114 |
aaacaaacaaacacaaccaacctg-aaaagaggcatttcaactatgatgttata-agtctattttgaggcttcaggtgcaactaaagtaaaaatatcgtg |
2447017 |
T |
|
| Q |
241 |
acatcataagac-aacacacatatggaaaggaacttcactacaatctcagacact |
294 |
Q |
| |
|
|||| ||||| | |||| |||||||||| |||||| |||||||||||||||| |
|
|
| T |
2447016 |
acattataaggcaaacatgcatatggaaatgaactttgttacaatctcagacact |
2446962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 194
Target Start/End: Original strand, 9564401 - 9564473
Alignment:
| Q |
122 |
gtgaataactattctattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattaagttata |
194 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||| ||||||| | |||||| |
|
|
| T |
9564401 |
gtgaataacccttctaatgaaatgaacaaacacgaccaacctgaaaaagagacatttcaactatgacgttata |
9564473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 2485554 - 2485495
Alignment:
| Q |
50 |
ctagaactattaccc-ttttcacc-ccatcttcagca--gctccagaccacaaaaagaac |
105 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| |||||||||||||||| |||| |
|
|
| T |
2485554 |
ctagaactattaccccttttcaccaccatcttcagcaaggctccagaccacaaaatgaac |
2485495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 292
Target Start/End: Complemental strand, 2554 - 2389
Alignment:
| Q |
124 |
gaataactattctattgaaacaaacaaacacagccaacctgaaaaagagacattccaactattaagttatacggagtatttcgaggcttaaggtgcaatt |
223 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||||||||||||||||||||| ||||||| | |||||| | ||||| |||| || ||||||||| |
|
|
| T |
2554 |
gaataacccttctattgaaacgaacaaacacaaccaacctgaaaaagagacatttcaactatgacgttata-agtctattttgaggattgaggtgcaata |
2456 |
T |
|
| Q |
224 |
aaaattataatattgagacatcataagacaacacacatatggaaaggaacttcactacaatctcagaca |
292 |
Q |
| |
|
|| |||| ||||||||||||| |||| || ||| ||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
2455 |
aatattaaaatattgagacattgtaaggca--acatatatggaaatgaacttcactataatctaagaca |
2389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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