View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2350_low_2 (Length: 553)

Name: NF2350_low_2
Description: NF2350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2350_low_2
NF2350_low_2
[»] chr7 (2 HSPs)
chr7 (58-400)||(12333396-12333739)
chr7 (58-400)||(6950996-6951339)
[»] chr4 (2 HSPs)
chr4 (58-400)||(18186750-18187093)
chr4 (187-237)||(32097845-32097895)
[»] chr3 (7 HSPs)
chr3 (58-400)||(13241836-13242179)
chr3 (99-400)||(54835246-54835547)
chr3 (245-400)||(29007060-29007215)
chr3 (398-542)||(51384512-51384656)
chr3 (459-541)||(51388632-51388714)
chr3 (258-375)||(41072838-41072954)
chr3 (16-44)||(51385028-51385056)
[»] chr5 (2 HSPs)
chr5 (149-400)||(39507163-39507414)
chr5 (58-90)||(39507422-39507454)


Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 58 - 400
Target Start/End: Original strand, 12333396 - 12333739
Alignment:
Q  58 gaaaaaggaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgta 156  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12333396 gaaaaaggaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgta 12333495  T
Q  157 ggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12333496 ggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaa 12333595  T
Q  257 gttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatcaatatctcaaatc 356  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12333596 gttcataagataggaagaaaagagaatttttttgaggtccctagactcatttgcctagcattgaatagattaagtattcaccttatcaatatctcaaatc 12333695  T
Q  357 cattatggattttatttgacgtctaaatcctttatcaggctatt 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  12333696 cattatggattttatttgacgtctaaatcctttgtcaggctatt 12333739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 58 - 400
Target Start/End: Complemental strand, 6951339 - 6950996
Alignment:
Q  58 gaaaaaggaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgta 156  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6951339 gaaaaaggaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgta 6951240  T
Q  157 ggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaa 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6951239 ggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaataaaacttcatacaccttaaa 6951140  T
Q  257 gttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatcaatatctcaaatc 356  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6951139 gttcataagataggaagaaaagagaattttttggaggtccctagactcatttgcctagcattgaatagattaagtattcaccttatcaatatctcaaatc 6951040  T
Q  357 cattatggattttatttgacgtctaaatcctttatcaggctatt 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  6951039 cattatggattttatttgacgtctaaatcctttgtcaggctatt 6950996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 58 - 400
Target Start/End: Original strand, 18186750 - 18187093
Alignment:
Q  58 gaaaaaggaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgta 156  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186750 gaaaaaggaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgta 18186849  T
Q  157 ggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18186850 ggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaa 18186949  T
Q  257 gttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatcaatatctcaaatc 356  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18186950 gttcataagataggaagaaaagagaatttttttgaggtccctagactcatttgcctagcattgaatagattaagtattcaccttatcaatatctcaaatc 18187049  T
Q  357 cattatggattttatttgacgtctaaatcctttatcaggctatt 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  18187050 cattatggattttatttgacgtctaaatcctttgtcaggctatt 18187093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 32097845 - 32097895
Alignment:
Q  187 taaatggactctctatcaacccacttaaataaaaatatcaaataggaaatg 237  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32097845 taaatggactctctatcaacctacttaaataaaaatatcaaataggaaatg 32097895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 58 - 400
Target Start/End: Complemental strand, 13242179 - 13241836
Alignment:
Q  58 gaaaaaggaaatgattccctgtgctctgatttannnnnnnn-agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgta 156  Q
    |||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242179 gaaaaaggaaatgattccctgtgctctgatttatttttttttagattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgta 13242080  T
Q  157 ggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaa 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13242079 ggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaa 13241980  T
Q  257 gttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatcaatatctcaaatc 356  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13241979 gttcataagataggaagaaaagagaatttttttgaggtccctagactcatttgcctagcattgaatagattaagtattcaccttatcaatatctcaaatc 13241880  T
Q  357 cattatggattttatttgacgtctaaatcctttatcaggctatt 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  13241879 cattatggattttatttgacgtctaaatcctttgtcaggctatt 13241836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 99 - 400
Target Start/End: Complemental strand, 54835547 - 54835246
Alignment:
Q  99 agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgcttttggcctggatcaactaaagttaaatggactct 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54835547 agattttaatctaagagcactaccaaagtttttcaaagaagaaggttatcctgacgtaggtctgcttttggcctggatcaactaaagttaaatggactct 54835448  T
Q  199 ctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcataagataggaagaaaagagaattttcttgaggtccct 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  54835447 ctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatacaccttaaagttcataagataggaagaaaagagaatttttttgaggtccct 54835348  T
Q  299 agactcatttgcctatcattgaatagattaagtattcaccttatcaatatctcaaatccattatggattttatttgacgtctaaatcctttatcaggcta 398  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  54835347 agactcatttgcctagcattgaatagattaagtattcaccttatcaatatctcaaatccattatggattttatttgacgtctaaatcctttgtcaggcta 54835248  T
Q  399 tt 400  Q
    ||    
T  54835247 tt 54835246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 245 - 400
Target Start/End: Original strand, 29007060 - 29007215
Alignment:
Q  245 atacaccttaaagttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatca 344  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29007060 atacaccttaaagttcataagataggaagaaaagagaatttttttgaggtccctagactcatttgcctagcattgaatagattaagtattcaccttatca 29007159  T
Q  345 atatctcaaatccattatggattttatttgacgtctaaatcctttatcaggctatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  29007160 atatctcaaatccattatggattttatttgacgtctaaatcctatgtcaggctatt 29007215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 398 - 542
Target Start/End: Complemental strand, 51384656 - 51384512
Alignment:
Q  398 attcagatggtccaaattcaagctccataaatttggaattataaagataataataaatacgctttgtttatgagggaaatagctgaaagaagtttagaca 497  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  51384656 attcagatggtccaaattcaagctccataaatttgaaattataaagataataataaatacgctttgtttatgagggaaattgctaaaagaagtttagaca 51384557  T
Q  498 aaaggaatcgtaagggattgggaataactaagatcactaggagta 542  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  51384556 aaaggaatcgtaagggattgggaataactaagctcactaggagta 51384512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 459 - 541
Target Start/End: Complemental strand, 51388714 - 51388632
Alignment:
Q  459 ctttgtttatgagggaaatagctgaaagaagtttagacaaaaggaatcgtaagggattgggaataactaagatcactaggagt 541  Q
    |||||| ||||||||| |||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||    
T  51388714 ctttgtctatgagggatatagctaaaagaagtttagacaaaaggaattgtaagggattaggaataactaagctcactaggagt 51388632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 258 - 375
Target Start/End: Original strand, 41072838 - 41072954
Alignment:
Q  258 ttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatcaatatctcaaatcc 357  Q
    |||||||||| ||||||||||||| | |  ||  ||| |||||||||||||||||| |||||||||||| | |||||||||||||||||||| |||||||    
T  41072838 ttcataagat-ggaagaaaagagattatatttttggttcctagactcatttgcctaacattgaatagataaggtattcaccttatcaatatcccaaatcc 41072936  T
Q  358 attatggattttatttga 375  Q
    ||||||  ||||||||||    
T  41072937 attatgatttttatttga 41072954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 44
Target Start/End: Complemental strand, 51385056 - 51385028
Alignment:
Q  16 ctcttcaccttatctatttttaaatcttt 44  Q
    |||||||||||||||||||||||||||||    
T  51385056 ctcttcaccttatctatttttaaatcttt 51385028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 149 - 400
Target Start/End: Complemental strand, 39507414 - 39507163
Alignment:
Q  149 ctgacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatac 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39507414 ctgacgtaggtctgcttttggcctggatcaactaaagttaaatggactctctatcaacccacttaaataaaaatatcaaataggaaatgaaacttcatac 39507315  T
Q  249 accttaaagttcataagataggaagaaaagagaattttcttgaggtccctagactcatttgcctatcattgaatagattaagtattcaccttatcaatat 348  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39507314 accttaaagttcataagataggaagaaaagagaatttttttgaggtccctagactcatttgcctagcattgaatagattaagtattcaccttatcaatat 39507215  T
Q  349 ctcaaatccattatggattttatttgacgtctaaatcctttatcaggctatt 400  Q
    ||||||||||||||| ||||||||| |||| |||||||||| ||||||||||    
T  39507214 ctcaaatccattatgaattttattttacgtttaaatcctttctcaggctatt 39507163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 90
Target Start/End: Complemental strand, 39507454 - 39507422
Alignment:
Q  58 gaaaaaggaaatgattccctgtgctctgattta 90  Q
    |||||||||||||||||||||||||||||||||    
T  39507454 gaaaaaggaaatgattccctgtgctctgattta 39507422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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