View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2351_high_1_N (Length: 551)
Name: NF2351_high_1_N
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_high_1_N |
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| [»] scaffold0332 (1 HSPs) |
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Alignment Details
Target: scaffold0332 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: scaffold0332
Description:
Target: scaffold0332; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 71 - 501
Target Start/End: Complemental strand, 10729 - 10299
Alignment:
| Q |
71 |
cttttttcatttgaaacaacccccaaaatctaaattttcattttcagctnnnnnnntcaaaagggtcgtcagtaaactaaaacataaaatacacatcttc |
170 |
Q |
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| T |
10729 |
cttttttcatttgaaacaacccccaaaatctaaattttcattttcagctaaaaaaatcaaaagggtcgtcagtaaactaaaacctaaaatacacatcttc |
10630 |
T |
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| Q |
171 |
ctgttgacttaatgttaatatcatgtctggtatcggtgccagaacttcatagattatacaccaatgtttcccaaactatggattcaatcctaacctatca |
270 |
Q |
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| T |
10629 |
ctgttgacttaatgttaatatcatgtctggtatcggtgccagaacttcatagattatacaccaatgtttcccaaactatggattcaatcctaacctatca |
10530 |
T |
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| Q |
271 |
tcatcaatccttatgaaatatacacaaatctgttcatcagaaaaatatgaaattctactaaaactaaattaacctaacaaataaacaaaattggaacttt |
370 |
Q |
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| T |
10529 |
tcatcaatccttatgaaatatacacaaatctgttcatcagaaaaacatgaaattctactaaaactaaattaacttaacaaataaacaaaattggaacttt |
10430 |
T |
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| Q |
371 |
tttcaatagaaacaatcccacaaatctaaaacttaattttcagctnnnnnnntggaaatggtcatcaataaactaatcaaaattgtaaataacaagcatt |
470 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10429 |
tttcaatagaaacaatcccacaaatctaaaacttaattttcagctaaacaaatcgaaatggtcatcaataaactaatcaaaagtgtaaataacaagcatt |
10330 |
T |
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| Q |
471 |
aaacacattatacacctcacttgtgcttaag |
501 |
Q |
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| T |
10329 |
aaacacattatacacctcacttgtgcttaag |
10299 |
T |
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