View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2351_low_1 (Length: 677)
Name: NF2351_low_1
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 268 - 666
Target Start/End: Complemental strand, 8563529 - 8563131
Alignment:
| Q |
268 |
tttatttataactcggagggaactgggctgtcagaaaattttgatgtaccaaaatgagtcttcactcttaatttaattgatcaatcataaatgttgaatc |
367 |
Q |
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| T |
8563529 |
tttatttttatctcggagtgaactgggcggtcagaaaattttgatggaccaaaatgagtcttcactcttaatttaattgatcaatcataaatgttgaatc |
8563430 |
T |
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| Q |
368 |
attagaaatattttacgttaatcatatatacctaagtcatacaaaaatgatgatttgtgattggctgacaatgtaaaatgtttttacattgacattacat |
467 |
Q |
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| T |
8563429 |
attagaaatattttactttaatcatatatacctaagtcatgcaaaaatgatgatttgtgattggctgacaatgtaaaatgtttttacattgacattgcat |
8563330 |
T |
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| Q |
468 |
caaaattaatcttgcattgcatatacttgtttatgcgaatatattaacgtatgtttctgtggatgtgaatctaatatattgatgtgttatttttaacata |
567 |
Q |
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| T |
8563329 |
caaaattaatcttgcattgcatatacttgtttatgcgaatctattaacgtatgtttctgtggatgtgaatctaatatattgatgtgttttttttaacata |
8563230 |
T |
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| Q |
568 |
tcagctcatggataaaacttcactccatcttccagagaaatctcttgcactggagattgtgaaattctacactgatttaaacatgcaaagatcattctt |
666 |
Q |
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| T |
8563229 |
tcagctcatggataaaacttcactccatcttccagagaaatctcttgcactggagattgtgaaattctacactgatttaaacatgcaaagatcattctt |
8563131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 73 - 272
Target Start/End: Complemental strand, 8563844 - 8563636
Alignment:
| Q |
73 |
attgtgaatttagtaaaatacttagctgacttaccttgttttctgctattattgc---------aggttcaaacaaaaagtgagaatcaccaaactgatt |
163 |
Q |
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| T |
8563844 |
attgtgaatttagtaaaatacttagctgacttaccttgttttctgctattattgctattattgcaggttcaaacaaaaagtgagaatcaccaaactgatt |
8563745 |
T |
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| Q |
164 |
atgtaaaagttgctattattgcagatccacaggtgagcttttctgcttttatggttatgtcatacatgcgtaattacatattaacataaacgttaaggat |
263 |
Q |
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| T |
8563744 |
atgtaaaagttgctattattgcagatccacaggtgagcttttctgcttttatggttatgtcatacatgcgtaattacatattaccataaatgttaaggat |
8563645 |
T |
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| Q |
264 |
ttaatttat |
272 |
Q |
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| T |
8563644 |
ttaatttat |
8563636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 51125878 - 51125916
Alignment:
| Q |
364 |
aatcattagaaatattttacgttaatcatatatacctaa |
402 |
Q |
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| T |
51125878 |
aatcattagaaatatttgactttaatcatatatacctaa |
51125916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 412 - 479
Target Start/End: Original strand, 36655273 - 36655338
Alignment:
| Q |
412 |
aaatgatgatttgtgattggctgacaatgtaaaatgtttttacattgacattacatcaaaattaatct |
479 |
Q |
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| T |
36655273 |
aaatgatgatttataattggctgacagtgtcaatt--ttttacattgacactgcatcaaaattaatct |
36655338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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