View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2351_low_14 (Length: 325)
Name: NF2351_low_14
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_14 |
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| [»] chr3 (5 HSPs) |
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| [»] scaffold1344 (1 HSPs) |
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| [»] scaffold0854 (1 HSPs) |
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| [»] scaffold0043 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 81 - 325
Target Start/End: Original strand, 18031015 - 18031262
Alignment:
| Q |
81 |
gagcagagagaaatggaaatattgatcgtaataggggacattcaaagattttgagaactttcagctttgaaaacattgagttgcaactattctttttatc |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
18031015 |
gagcagagagaaatggaaatattgatcgtaataggggacattcaaagattttgagaactttcagctttgaaaacattgagttgcaactattcattttatc |
18031114 |
T |
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| Q |
181 |
attatcaccatcgtctatttcctcaatcttgtc---atccactctcctttcatcagtaaatatgttttctaatttctcacattgacttatttccaagctc |
277 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18031115 |
attatcaccattgtctatttcctcaatcttgtcaatatccactctcctttcatcagtaaatatgttttctaatttctcacattgacttatttccaagctc |
18031214 |
T |
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| Q |
278 |
tccagctgtaccaggctttgagtagttgttagatcaaaaacagaaacc |
325 |
Q |
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| T |
18031215 |
tccagctgtaccaggctttgagtagttgttagatcaaaaacagaaacc |
18031262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 27344229 - 27344175
Alignment:
| Q |
134 |
agaactttcagctttgaaaacattgagttgcaactattctttttatcattatcac |
188 |
Q |
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|||| |||||| |||| ||||||||||||||||||||| || ||||||||||||| |
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| T |
27344229 |
agaaatttcagatttggaaacattgagttgcaactattgttattatcattatcac |
27344175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 27370701 - 27370631
Alignment:
| Q |
131 |
ttgagaactttcagctttgaaaacattgagttgcaactattctttttatcattatcaccatcgtctatttc |
201 |
Q |
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||||||| |||||| |||| ||||||||||||| |||||| || ||||||||||||||||| ||||||| |
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| T |
27370701 |
ttgagaaatttcagatttggaaacattgagttgtaactatcgttattatcattatcaccatcaactatttc |
27370631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 18723184 - 18723249
Alignment:
| Q |
136 |
aactttcagctttgaaaacattgagttgcaactattctttttatcattatcaccatcgtctatttc |
201 |
Q |
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||||||||| |||| |||||||||||||||| | || || ||||||||||||||||| ||||||| |
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| T |
18723184 |
aactttcagatttggaaacattgagttgcaaattttgttgttatcattatcaccatcaactatttc |
18723249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 168
Target Start/End: Original strand, 27401041 - 27401077
Alignment:
| Q |
132 |
tgagaactttcagctttgaaaacattgagttgcaact |
168 |
Q |
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||||||||||||| |||| |||||||||||||||||| |
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| T |
27401041 |
tgagaactttcaggtttggaaacattgagttgcaact |
27401077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1344 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1344
Description:
Target: scaffold1344; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 917 - 862
Alignment:
| Q |
133 |
gagaactttcagctttgaaaacattgagttgcaactattctttttatcattatcac |
188 |
Q |
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||||| |||||| |||| ||||||||||||||||||||| || ||||||||||||| |
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| T |
917 |
gagaaatttcagatttggaaacattgagttgcaactatttttattatcattatcac |
862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0854 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0854
Description:
Target: scaffold0854; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 4080 - 4134
Alignment:
| Q |
133 |
gagaactttcagctttgaaaacattgagttgcaactattctttttatcattatca |
187 |
Q |
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| T |
4080 |
gagaaatttcagatttggaaacattgagttgcaacttttgtttttatcattatca |
4134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 73023 - 73078
Alignment:
| Q |
133 |
gagaactttcagctttgaaaacattgagttgcaactattctttttatcattatcac |
188 |
Q |
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||||| ||||| |||| ||||||||||||||||||||| || ||||||||||||| |
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| T |
73023 |
gagaaatttcaaatttggaaacattgagttgcaactattgttattatcattatcac |
73078 |
T |
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