View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2351_low_17 (Length: 318)
Name: NF2351_low_17
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_17 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 78 - 318
Target Start/End: Original strand, 45746640 - 45746880
Alignment:
| Q |
78 |
cacagacaaaagcagcttaggcaaccttgttgtggagacattaaaaaccttaatgccacaactcagatcgcgagtgcagatttttaaaagaaaatggaac |
177 |
Q |
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| T |
45746640 |
cacaaacaaaagcggcttaggcaaccttgttgtggagacattaaaaaccttaatgccgcaactcagatcgcgactgcagatttttaaaagaaaatggaac |
45746739 |
T |
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| Q |
178 |
atggtatttaacattcaccttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctt |
277 |
Q |
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| T |
45746740 |
atgatatttaacattcaccttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctt |
45746839 |
T |
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| Q |
278 |
tgtttttcatcaggatgaggacactccttgaagaaactaaa |
318 |
Q |
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| T |
45746840 |
tgtttttcatcaggatgaggacactccttgaagaaactaaa |
45746880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 194 - 318
Target Start/End: Original strand, 9960 - 10084
Alignment:
| Q |
194 |
accttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcaggat |
293 |
Q |
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| T |
9960 |
accttcatctgagttcgccgattctgaaaccagaacttgacttgtttgtttgccaagccaagcttcttgctaaggtcagttctttgcttctcatcaggat |
10059 |
T |
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| Q |
294 |
gaggacactccttgaagaaactaaa |
318 |
Q |
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| T |
10060 |
gtggacactccttgaagaaactaaa |
10084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 12327055 - 12327179
Alignment:
| Q |
192 |
tcaccttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcagg |
291 |
Q |
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| T |
12327055 |
tcaccttcatttgtgttcttcgattttggaaccaaaacttaacttgtcttgtttccaaacaaagccttttgctaagttccaatctttgtttctcatctgg |
12327154 |
T |
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| Q |
292 |
atgaggacactccttgaagaaacta |
316 |
Q |
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| T |
12327155 |
gtgaggacactccttaaacaaacta |
12327179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 309
Target Start/End: Complemental strand, 28597652 - 28597614
Alignment:
| Q |
271 |
caacctttgtttttcatcaggatgaggacactccttgaa |
309 |
Q |
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| T |
28597652 |
caacctttgtttctcatcaggatgaggacactccttgaa |
28597614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 303
Target Start/End: Original strand, 28599320 - 28599429
Alignment:
| Q |
194 |
accttcatttgggttcgacgattctgaaaccagaatttgacttgtttattttccaagccaagtctcttgctaagatccaacctttgtttttcatcaggat |
293 |
Q |
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| T |
28599320 |
accttcatttgtgttcttctattttggaaccaaaacttgacttgtcttgtttccaaacaaagccttttgctaagttcaagtctttgtttttcatcaggat |
28599419 |
T |
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| Q |
294 |
gaggacactc |
303 |
Q |
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| T |
28599420 |
gaggacactc |
28599429 |
T |
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