View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2351_low_1_N (Length: 620)
Name: NF2351_low_1_N
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_1_N |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 34 - 615
Target Start/End: Complemental strand, 44247837 - 44247254
Alignment:
| Q |
34 |
ttgtttacattatatcatacattgatatatttattatgagaacaaatttttgcttcttaatttaaagtttttacaaaaagaaattggcagataccattag |
133 |
Q |
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| T |
44247837 |
ttgtttacattatatcatacattgatatatttattatgagaacaaatttttgcttcttaatttaaagtttttacaaaaagaaat-ggcagataccattag |
44247739 |
T |
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| Q |
134 |
tgtttgatagacnnnnnnnttacacgaggacaagatataaatcataaatcatgacattnnnnnnnttgaaattaaatcaggacatgatagacaaattaaa |
233 |
Q |
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| T |
44247738 |
tgtttgatagacaaacaaattacacgaggacaagatataaatcataaatcatgacattaaaaaaattgaaattaaatcaggacatgatagacaaattaaa |
44247639 |
T |
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| Q |
234 |
aatgtggtagataccgttattgttttacaagtgagtttttgaaagaaaaagaagtgaatgtttgcacttgcaccgttttaatcttcaaaataacatatga |
333 |
Q |
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| T |
44247638 |
aatgtggtagataccgttattgttttacaagtgagtttttgaaagaaaaagaagtgaatgtttgcacttgcaccgttttaatcttcaaaataacatatga |
44247539 |
T |
|
| Q |
334 |
taaccta---cctcaattttatttttatttgaccaacctcaatatttagnnnnnnnaaaccttatccaattaaaatggatcctctcatgtaatatgaggg |
430 |
Q |
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| T |
44247538 |
taacctacctcctcaattttatttttatttgaccaacctcaatatttagtttttttaaaccttatccaattaaaatggatcctctcatgtaatatgaggg |
44247439 |
T |
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| Q |
431 |
ttcgacgaaatcctccttgtttcatcatatcggagaggnnnnnnnntttagagttaagaatgtggacatatccaattaaaacttagagnnnnnnnattca |
530 |
Q |
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| T |
44247438 |
ttcgacgaaatcctccttgtttcatcatatcggagaggaaaaaaaatttagagttaagaatgtggacatatccaattaaaatttagagtttttttattca |
44247339 |
T |
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| Q |
531 |
tcactggacatatcctccattgtttatttttactatatattaattacaatttagtgttaagaatgttttttaaccctttgcttct |
615 |
Q |
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| T |
44247338 |
tcactggacatatcctccattgtttatttttactatatattaattacaatttagtgttaagaatgttttttaaccctttggttct |
44247254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 8563921 - 8563892
Alignment:
| Q |
7 |
gttggatctattatgtttttgattttgttg |
36 |
Q |
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| T |
8563921 |
gttggatctattatgtttttgattttgttg |
8563892 |
T |
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