View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2351_low_2 (Length: 592)
Name: NF2351_low_2
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 43 - 475
Target Start/End: Original strand, 43588026 - 43588460
Alignment:
| Q |
43 |
caaagggccaataataaggaggtcaaggagatttttagacgaaagaagatgaagaaatatcggtctcttaaggaaatttataaggtgacagtacccattg |
142 |
Q |
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| T |
43588026 |
caaagggccaataataaggaggtcaaggagatttttagacgaaagaagatgaagaaatatcggtctcttaaggaaatttataaggtgacagtacccatcg |
43588125 |
T |
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| Q |
143 |
agaactggatcgatccttttgacaagtagctagctttgtatctgaggctat--tttatgaagccgtgaaggtaggggagggaaaatattcttcaataata |
240 |
Q |
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| T |
43588126 |
agaactggatcgatccttttgacaagtagctagctttgtatctgaggctatagtttatgaagccgtgaaggtaggggagggaaaatattctttaataata |
43588225 |
T |
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| Q |
241 |
aataatactgggtcctctccctcattttaataacatttaattctgcaatatgtgtcttgtttctttgggaggatggttgatttggatttatggtatatag |
340 |
Q |
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| T |
43588226 |
aataatactgggttctctccctcattttaataacatttaattctgcaatatgtgtcttgtttctttgggaggatggttgatttggatttatggtatatag |
43588325 |
T |
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| Q |
341 |
tagtaatctttcaattctcttttatatttacgatttcatttgcatgattgattttcttactcacagctgaaattggtgatggtagagatctaactctaga |
440 |
Q |
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| T |
43588326 |
tagtaatctttcaattctcttttatatttacgatttcatttgcatgattgattttcttactcacagctgaaattggtgatggtatagatctaactctaga |
43588425 |
T |
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| Q |
441 |
actttgttacctggtaaacaagatagattccttac |
475 |
Q |
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| T |
43588426 |
actttgttacctggtaaacaagatagattccttac |
43588460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 535 - 592
Target Start/End: Complemental strand, 34899975 - 34899918
Alignment:
| Q |
535 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctc |
592 |
Q |
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| T |
34899975 |
atctcaacttgaaagttgaaactaccaaactttacctatatgcatataaacacatctc |
34899918 |
T |
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