View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2351_low_20 (Length: 307)
Name: NF2351_low_20
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 50411584 - 50411810
Alignment:
| Q |
1 |
ataagttataaacattgaatgtaaaagtgttgagaagtgaaaaatagtgcgttcaataaatggtttgatgaatgaggcgctcaagtttctatcctattta |
100 |
Q |
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| T |
50411584 |
ataagttataaacattgaatgtaaaagtgttgagaagtgaaaaatagtgcgtttgatagatagtttgatgaatgaggcgctcaagtttctatcctattta |
50411683 |
T |
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| Q |
101 |
aggaaaaacaacagt-------tgagttaaatttcacttttatttcctacttttcttttaagggaattatctacctttttgtgtgtttaattatctgaat |
193 |
Q |
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| T |
50411684 |
atgaaaaacaacagttttcagctgagttaaatttcacttttatttcctacttttcttttaaggaaattatctacctttttgcgtgtttaattatctaaat |
50411783 |
T |
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| Q |
194 |
ataaaataaataaaagacatcaaatcc |
220 |
Q |
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| T |
50411784 |
ataaaataaataaaagacatcaaatcc |
50411810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 50408681 - 50408892
Alignment:
| Q |
1 |
ataagttataaacattgaatgtaaaa-gtgttgagaagtgaaaaatagtgcgttcaataaatggtttgatgaatgaggcgctcaagtttctatcctattt |
99 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
50408681 |
ataagttataaacattgaatgtaaaaagtgaagagaagtgaaaaatagtgcgttcgatagatggtttaatgaatgaggcgctcaagtttctatcctattt |
50408780 |
T |
|
| Q |
100 |
aaggaaaaacaacagtt-------gagttaaatttcacttttatttcctacttttcttttaagggaattatctacctttttgtgtgtttaattatctgaa |
192 |
Q |
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|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50408781 |
aatgaaaaacaacagttttcagctgagttaaatttcacttttatttcctacttttcttttaagggaattatctacctttttgtgtgtttaattatctgaa |
50408880 |
T |
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| Q |
193 |
tataaaataaat |
204 |
Q |
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| T |
50408881 |
tataaaataaat |
50408892 |
T |
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