View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2351_low_25 (Length: 286)
Name: NF2351_low_25
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 45040829 - 45040657
Alignment:
| Q |
65 |
ggaagaagtccattatagaagtgattaagagtatcaaaggtaacaatttacacattcattagtgaccgatctatatagtatgtaattgtgtcaccagttt |
164 |
Q |
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| T |
45040829 |
ggaagaagtccattatagaagtgattaagagtatcaaaggtaacaatttacacattcattagtgaccaatctatatagtatgtaattgtgtcaccagttt |
45040730 |
T |
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| Q |
165 |
gatccttgattgg--tatttcttaaaaaacatgttggaaagtttgactccttaggagtgcatttgtttatgat |
235 |
Q |
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| T |
45040729 |
gatccttgattggtatatttcttaaaaaacatgttggaaagtttgactccttaagagtgcatttgtttatgat |
45040657 |
T |
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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 118
Target Start/End: Complemental strand, 45044497 - 45044462
Alignment:
| Q |
83 |
aagtgattaagagtatcaaaggtaacaatttacaca |
118 |
Q |
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| T |
45044497 |
aagtgattaagagtatcaaaggtaagaatttacaca |
45044462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 38345034 - 38345071
Alignment:
| Q |
68 |
agaagtccattatagaagtgattaagagtatcaaaggt |
105 |
Q |
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| T |
38345034 |
agaagtccattacaaaagtgattaagagtatcaaaggt |
38345071 |
T |
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