View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2351_low_28 (Length: 254)
Name: NF2351_low_28
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 4999074 - 4998850
Alignment:
| Q |
1 |
ccccaaagctttttcactgcaactatttgacctgttttcaccttcaccttataaacctgacctgatccacctcttccaatcaaattctcattggttaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4999074 |
ccccaaagctttttcactgcaactatttgacctgttttcaccttcaccttataaacctgacctgacccacctcttccaatcaaattctcattggttaaaa |
4998975 |
T |
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| Q |
101 |
aaggtactatatcttcctcattgaacccaactctctgaaaagctgttgtcataaaagcccgtttggattttccaacaaaagatttcgactttttcttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4998974 |
aaggtactatatcttcctcattgaacccaactctctgaaaagctgttgtcataaaagcccgtttggattttccaacaaaagatttcgactttttcttcaa |
4998875 |
T |
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| Q |
201 |
gaaccacaaaacagacagaaaaatc |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
4998874 |
gaaccacaaaacagacagaaaaatc |
4998850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 4798390 - 4798511
Alignment:
| Q |
94 |
gttaaaaaaggtactatatcttcctcattgaacccaactctctgaaaagctgttgtcataaaagcccgtttggattttccaacaaaagatttcgactttt |
193 |
Q |
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||||||||||| | ||||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4798390 |
gttaaaaaaggaattatatcttcttcattgaaccctactctctgaaacgtggttgtcataaaagcccgtttggattttccaacaaaagaagggtactttt |
4798489 |
T |
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| Q |
194 |
tcttcaagaaccacaaaacagac |
216 |
Q |
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||||||| |||||||||| |||| |
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| T |
4798490 |
tcttcaa-aaccacaaaagagac |
4798511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 4798306 - 4798359
Alignment:
| Q |
1 |
ccccaaagctttttcactgcaactatttgacctgttttcaccttcaccttataa |
54 |
Q |
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|||| |||||||||||| ||| |||| ||||| |||||||||||||| |||||| |
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| T |
4798306 |
cccctaagctttttcaccgcagctatgtgacccgttttcaccttcactttataa |
4798359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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