View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2351_low_29 (Length: 251)

Name: NF2351_low_29
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2351_low_29
NF2351_low_29
[»] chr8 (1 HSPs)
chr8 (64-179)||(26520864-26520979)
[»] chr3 (2 HSPs)
chr3 (64-179)||(34826650-34826766)
chr3 (59-110)||(3944890-3944941)
[»] chr7 (4 HSPs)
chr7 (95-179)||(12139073-12139158)
chr7 (61-113)||(41236786-41236838)
chr7 (75-120)||(4270187-4270232)
chr7 (69-109)||(23283883-23283923)
[»] chr1 (2 HSPs)
chr1 (72-171)||(41466221-41466321)
chr1 (72-169)||(45320464-45320562)
[»] chr2 (2 HSPs)
chr2 (72-146)||(3230097-3230172)
chr2 (75-120)||(14565204-14565249)
[»] chr5 (1 HSPs)
chr5 (62-123)||(39149458-39149519)
[»] chr4 (2 HSPs)
chr4 (58-110)||(12639959-12640011)
chr4 (69-121)||(33758117-33758168)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 64 - 179
Target Start/End: Original strand, 26520864 - 26520979
Alignment:
Q  64 ggtagcatttcacatgggaaggggcaatcccttcccaccatgggaaatgtg-ttttttacctgcaatagcaagtcaaacaggttaccattggttttgttt 162  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  26520864 ggtagcatttcacatgggaaggg-caatcccttcccaccatgggaaatgtggttttttacctgcaatagcaagtcaaacaggttgccattggttttgttt 26520962  T
Q  163 ggaattgcacttgagac 179  Q
    |||||||||||||||||    
T  26520963 ggaattgcacttgagac 26520979  T

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Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 64 - 179
Target Start/End: Complemental strand, 34826766 - 34826650
Alignment:
Q  64 ggtagcatttcacatgggaaggggcaatcccttcccaccatgggaaatgtg-ttttttacctgcaatagcaagtcaaacaggttaccattggttttgttt 162  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||| |||||||||  ||||||||||||||    
T  34826766 ggtagcatttcacatgggaaggggcaatccctttccactatgggaaatgtggttttttacctgcaatagcaagttaaacaggttgtcattggttttgttt 34826667  T
Q  163 ggaattgcacttgagac 179  Q
    |||||||||||||||||    
T  34826666 ggaattgcacttgagac 34826650  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 110
Target Start/End: Original strand, 3944890 - 3944941
Alignment:
Q  59 ttattggtagcatttcacatgggaaggggcaatcccttcccaccatgggaaa 110  Q
    |||||||| |||||||||||||||| ||  ||||| ||||||||||||||||    
T  3944890 ttattggtggcatttcacatgggaaaggttaatcctttcccaccatgggaaa 3944941  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 95 - 179
Target Start/End: Complemental strand, 12139158 - 12139073
Alignment:
Q  95 ttcccaccatgggaaatgtg-ttttttacctgcaatagcaagtcaaacaggttaccattggttttgtttggaattgcacttgagac 179  Q
    |||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||    
T  12139158 ttcccaccatgggaaaggtgattttttacctgcaatagccagtcaaacaggttgccattggttttgtttggaattgcagttgagac 12139073  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 41236786 - 41236838
Alignment:
Q  61 attggtagcatttcacatgggaaggggcaatcccttcccaccatgggaaatgt 113  Q
    |||||| |||||||||||||||||| | ||  |||||||||||||||||||||    
T  41236786 attggtggcatttcacatgggaaggtgtaaaaccttcccaccatgggaaatgt 41236838  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 4270187 - 4270232
Alignment:
Q  75 acatgggaaggggcaatcccttcccaccatgggaaatgtgtttttt 120  Q
    ||||||||| ||  ||||| ||||||||||||||||||||||||||    
T  4270187 acatgggaaaggtgaatcctttcccaccatgggaaatgtgtttttt 4270232  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 109
Target Start/End: Complemental strand, 23283923 - 23283883
Alignment:
Q  69 catttcacatgggaaggggcaatcccttcccaccatgggaa 109  Q
    ||||||||||||||| ||| ||||| |||||||||||||||    
T  23283923 catttcacatgggaaaggggaatcctttcccaccatgggaa 23283883  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 41466221 - 41466321
Alignment:
Q  72 ttcacatgggaaggggcaatcccttcccaccatgggaaatgtg-ttttttacctgcaatagcaagtcaaacaggttaccattggttttgtttggaattgc 170  Q
    ||||||||||||||   ||  |||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  41466221 ttcacatgggaaggtataaaaccttcccaccatgggaaaggtggttttttacctgcaatagccagtcaaacaggttgccattggttttgtttggaattgc 41466320  T
Q  171 a 171  Q
    |    
T  41466321 a 41466321  T

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Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 45320464 - 45320562
Alignment:
Q  72 ttcacatgggaaggggcaatcccttcccaccatgggaaatgtg-ttttttacctgcaatagcaagtcaaacaggttaccattggttttgtttggaattg 169  Q
    ||||||||||||||   ||  |||||||||||||||||||||| ||||||||||||||||||  |||||||| ||| ||||||||||||||||||||||    
T  45320464 ttcacatgggaaggtataaaaccttcccaccatgggaaatgtgcttttttacctgcaatagcctgtcaaacaagttgccattggttttgtttggaattg 45320562  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 146
Target Start/End: Complemental strand, 3230172 - 3230097
Alignment:
Q  72 ttcacatgggaaggggcaatcccttcccaccatgggaaatgtg-ttttttacctgcaatagcaagtcaaacaggtt 146  Q
    |||||||||||| || |||||| || ||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  3230172 ttcacatgggaaaggccaatccttttccaccatgggaaaggtggttttttacctgcaatagcaagtcaaacaggtt 3230097  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 14565249 - 14565204
Alignment:
Q  75 acatgggaaggggcaatcccttcccaccatgggaaatgtgtttttt 120  Q
    ||||||||| ||  ||||| ||||||||||||||||||||||||||    
T  14565249 acatgggaaaggtgaatcctttcccaccatgggaaatgtgtttttt 14565204  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 39149519 - 39149458
Alignment:
Q  62 ttggtagcatttcacatgggaaggggcaatcccttcccaccatgggaaatgtgttttttacc 123  Q
    ||||| |||||||||||||||| ||  ||||| ||||||||||||||||  | |||||||||    
T  39149519 ttggtggcatttcacatgggaaaggtgaatcctttcccaccatgggaaagtttttttttacc 39149458  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 12639959 - 12640011
Alignment:
Q  58 attattggtagcatttcacatgggaaggggcaatcccttcccaccatgggaaa 110  Q
    ||||||||| |||||||||||||||| ||  ||||| || |||||||||||||    
T  12639959 attattggtggcatttcacatgggaaaggttaatccttttccaccatgggaaa 12640011  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 33758168 - 33758117
Alignment:
Q  69 catttcacatgggaaggggcaatcccttcccaccatgggaaatgtgtttttta 121  Q
    ||||||||||||||| || |||||| |||||||||| |||||||| |||||||    
T  33758168 catttcacatgggaaaggtcaatcctttcccaccat-ggaaatgtttttttta 33758117  T

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