View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2351_low_30 (Length: 251)
Name: NF2351_low_30
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_30 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 50408389 - 50408631
Alignment:
| Q |
8 |
ccaacactatagcattctagacaaatttatttagggacataattgaaattaaaatagacacccnnnnnnncatttattctatttatatattgtagattat |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
50408389 |
ccaacaatatagcattctagacaaatttatttagggacataattgaaattaaaatagacacccaaaaat-catttattctatttatatattatagattat |
50408487 |
T |
|
| Q |
108 |
ctattaaaaatcaaaatgatgatctatgaaccaaacactacgagaacatcaattgagattttggatgtatgttgctctactaattatctaaataatataa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408488 |
ctattaaaaatcaaaatgatgatctatgaaccaaacactaccagaacatcaattgagattttggatgtatgttgctctactaattatctaaataatataa |
50408587 |
T |
|
| Q |
208 |
ttatattttcattaatagtttgctctagtaatagttctttaaaa |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50408588 |
ttatattttcattaatagtttgctctagtaatagttctttaaaa |
50408631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 50411305 - 50411534
Alignment:
| Q |
8 |
ccaacactatagcattctagacaaatttatttagggacataattgaaattaaaatagacacccnnnnnnncatttattctatttatatattgtagattat |
107 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
50411305 |
ccaacaatatagcattctagacaaatttatttagggacataattgaaattaaaatagacaccc----------ttattctatttatatattgtagattat |
50411394 |
T |
|
| Q |
108 |
ctattaaaaatcaaaatgatgatctatgaaccaaacactacgagaacatcaattgagattttggatgtatgttgctctactaattatctaaataatataa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50411395 |
ctattaaaaatcaaaatgatgatctatgaaccaaacactaccagaacatcaattgagattttggatgtatgttgctctactaattatctaaataatataa |
50411494 |
T |
|
| Q |
208 |
ttatattttcattaatagtttgctctagtaatagttcttt |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50411495 |
ttatattttcattaatagtttgctctagtaatagttcttt |
50411534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University