View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2351_low_35 (Length: 228)
Name: NF2351_low_35
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_35 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 11779029 - 11779138
Alignment:
| Q |
1 |
ggaaacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctc |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11779029 |
ggaaacttgatatcatatctaacagggccactcaaacaaagcactgcaactgctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctc |
11779128 |
T |
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| Q |
101 |
tctgtggtgc |
110 |
Q |
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||| |||||| |
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| T |
11779129 |
tctttggtgc |
11779138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 11675957 - 11676064
Alignment:
| Q |
4 |
aacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctct |
103 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
11675957 |
aacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctct |
11676056 |
T |
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| Q |
104 |
gtggtgct |
111 |
Q |
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| T |
11676057 |
ttggtgct |
11676064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 111
Target Start/End: Original strand, 11684236 - 11684343
Alignment:
| Q |
4 |
aacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctct |
103 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
11684236 |
aacttgatatcatatctaacaggaccactcaaacaaagcactgcaactgctgctgagaatgtgaatatttgggctggagttgcttctctccttcctctct |
11684335 |
T |
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| Q |
104 |
gtggtgct |
111 |
Q |
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||||||| |
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| T |
11684336 |
ttggtgct |
11684343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 11696056 - 11696160
Alignment:
| Q |
7 |
ttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctgtg |
106 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||| | ||||||||| |||||||||||||||||||||| |||||||||| || |
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| T |
11696056 |
ttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatatttgggctggaactgcttctctacttcctctctttg |
11696155 |
T |
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| Q |
107 |
gtgct |
111 |
Q |
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||||| |
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| T |
11696156 |
gtgct |
11696160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 11797897 - 11798001
Alignment:
| Q |
7 |
ttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctctgtg |
106 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||| | |||||||||||||||| ||||||||||||||| |||||||||| || |
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| T |
11797897 |
ttgatatcatatctaacaggaccactcaaacaaagcactgcaaaagctgctgaaaatgtgaatgtttgggttggaactgcttctctacttcctctctttg |
11797996 |
T |
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| Q |
107 |
gtgct |
111 |
Q |
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||||| |
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| T |
11797997 |
gtgct |
11798001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 11701853 - 11701949
Alignment:
| Q |
7 |
ttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctctct |
103 |
Q |
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|||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||| |
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| T |
11701853 |
ttgatatcatatctaacagggccactcaaacagagcactgcaacagctgctaagaatgtaaatgtttgggctggaacagcttctctacttcctctct |
11701949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 16492 - 16594
Alignment:
| Q |
1 |
ggaaacttgatatcatatctaacaggaccactcaaacaaaacactgcaacagctgctaagaatgtgaatgtttgggctggaactgcttctctccttcctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
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| T |
16492 |
ggaaacttgatatcatatctaacaggaccactcaaacaaagcactgcaacagctgctaagaatgtgaatatttgggctggaactgcttctctacttcctc |
16591 |
T |
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| Q |
101 |
tct |
103 |
Q |
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||| |
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| T |
16592 |
tct |
16594 |
T |
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