View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2351_low_4 (Length: 549)
Name: NF2351_low_4
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 102 - 538
Target Start/End: Original strand, 52810543 - 52810979
Alignment:
| Q |
102 |
gatggcagatctagaacccagaacctcaaaaagtttgtctgccttggctggagcaacatcccatttcctagcagcagctgtaaaaacctgagcaaccctt |
201 |
Q |
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| T |
52810543 |
gatggcagatctagaacccagaacctcaaaaagtttgtctgccttggctggagcaacatcccatttcctagcagcagctgtaaaaacctgagcaaccctt |
52810642 |
T |
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| Q |
202 |
acgacagggtttcctgatggcttcaagtatctatatttaggagatcctgataaaaatgtcaaaagggctatgatagcagagatcaatgatataaagaaac |
301 |
Q |
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| T |
52810643 |
acgacagggtttcctgatggcttcaagtatctatatttaggagatcctgataaaaatgtcaaaagggctatgatagcagagatcaatgatataaagaaac |
52810742 |
T |
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| Q |
302 |
ccattgtccacttccctgtgtcctcataatagaccaatacagtattggagaacaaagatccaacgttgagggaaaagtaaaaataacagaagaaagctac |
401 |
Q |
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| T |
52810743 |
ccattgtccacttccccgtgtcctcataatagaccaatacagtattggagaacaaagatccaacgttgagggaaaagtaaaaataacagaagaaagctac |
52810842 |
T |
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| Q |
402 |
ttttaaactcctctcttttggattcctctcatcatattggtcagctccaaaggttgctaaggttggttggtgtcctccataaccaaatgcaacaagatat |
501 |
Q |
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| T |
52810843 |
ttttaaactcctctcttttggattcctctcatcatattggtcagctccaaaggttgctaaggttggttggtgtcctccataaccaaatgcaacaagatat |
52810942 |
T |
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| Q |
502 |
atagaaaagtagaaaatgctaactccaattgatgatg |
538 |
Q |
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| T |
52810943 |
atagaaaagtagaaaatgctaactccaattgatgatg |
52810979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 430 - 503
Target Start/End: Original strand, 3804004 - 3804077
Alignment:
| Q |
430 |
tcatcatattggtcagctccaaaggttgctaaggttggttggtgtcctccataaccaaatgcaacaagatatat |
503 |
Q |
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| T |
3804004 |
tcatcaaattgatcagctccaaaggttgctaaggtaggttgatgccctccatatccaaatgcaaccatatatat |
3804077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 430 - 503
Target Start/End: Complemental strand, 396650 - 396577
Alignment:
| Q |
430 |
tcatcatattggtcagctccaaaggttgctaaggttggttggtgtcctccataaccaaatgcaacaagatatat |
503 |
Q |
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| T |
396650 |
tcatcaaattgatcagctccaaatgttgctaaggtaggttgatgccctccatatccaaatgcaaccaaatatat |
396577 |
T |
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