View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2351_low_5 (Length: 535)
Name: NF2351_low_5
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 72 - 506
Target Start/End: Original strand, 45636872 - 45637306
Alignment:
| Q |
72 |
cttaattcacactcattctaagacgtggaacgtggaggtcattcatcaagtgtttgatgatgcatcggctgcatccattttacaaactttcttgtttgag |
171 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45636872 |
cttaattcacactcattctaagacgtggaacgtggaggtcattcatcaagtgtttgatgatgcatcggctgcatccattttacaaacttccttgtttgag |
45636971 |
T |
|
| Q |
172 |
caagtgactgatgatgctttgctttggaaggcggagaggaaaggactatattcagtcaaaagtgcttattgactttgtgtggaggagttgatcgatactg |
271 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45636972 |
caagtgactgatgatgctttgatttggaaggcggagaggaatggactatattcagtcaaaagtgcttatagactttgtgtggaggagttgatcgatactg |
45637071 |
T |
|
| Q |
272 |
ctcatctgcggtgagctggatattggtctaggatttggtggttaaaagttccaccaaagaataaaaatataatttggcgaatgtgtagagggtgttttcc |
371 |
Q |
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||||||||||| ||| || |||||||||| |||||||| ||||||||||||| | ||||| ||||||| |||| ||||||||||||||||||| ||||| |
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| T |
45637072 |
ctcatctgcggagagatgaatattggtctgggatttggcggttaaaagttcctcaaaagattaaaaatctaatctggcgaatgtgtagagggttctttcc |
45637171 |
T |
|
| Q |
372 |
tacccgtgttcgtttacaggataaaggagttcaatgtcccctgagttgtgttgtttgtgatggaccttctgaagatatgcatcatgttttctttgattgt |
471 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||| |
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| T |
45637172 |
tacccgtgttcgtttacaggataaatgagttcaatgccccctgagttgtgttgtttgtgatagaccttctgaagatatgcaccatattttctttgattgt |
45637271 |
T |
|
| Q |
472 |
tcctttgcggtacaggtgtggcttagagctgggct |
506 |
Q |
| |
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||||||||||| || |||||||||| ||||||||| |
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| T |
45637272 |
tcctttgcggtgcatgtgtggcttaaagctgggct |
45637306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 84 - 503
Target Start/End: Original strand, 41343035 - 41343454
Alignment:
| Q |
84 |
tcattctaagacgtggaacgtggaggtcattcatcaagtgtttgatgatgcatcggctgcatccattttacaaactttcttgtttgagcaagtgactgat |
183 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||| || ||||||||||||| ||| ||||||||||||||| | |
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| T |
41343035 |
tcattctaagacgtggaacgcggaggtcattcaccaggtgtttgatgatgcatcggctgcctctattttacaaacttcattggttgagcaagtgactgct |
41343134 |
T |
|
| Q |
184 |
gatgctttgctttggaaggcggagaggaaaggactatattcagtcaaaagtgcttattgactttgtgtggaggagttgatcgatactgctcatctgcggt |
283 |
Q |
| |
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|| || ||| |||||||||| ||||||| || || |||||||||| |||||||||| | || |||||||||||||| ||||| ||| ||||||||||| |
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| T |
41343135 |
gacgccttgatttggaaggcagagaggactggtctttattcagtcagaagtgcttatcgtctgtgtgtggaggagttaatcgacactactcatctgcgga |
41343234 |
T |
|
| Q |
284 |
gagctggatattggtctaggatttggtggttaaaagttccaccaaagaataaaaatataatttggcgaatgtgtagagggtgttttcctacccgtgttcg |
383 |
Q |
| |
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||||||| ||||||||| | ||||| ||||||||||||| || ||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
41343235 |
gagctggttattggtctggtgtttggcggttaaaagttcctcctaaggttaaaaatctaatttggcgtatgtgtagagggtgctttcctacccgtgttcg |
41343334 |
T |
|
| Q |
384 |
tttacaggataaaggagttcaatgtcccctgagttgtgttgtttgtgatggaccttctgaagatatgcatcatgttttctttgattgttcctttgcggta |
483 |
Q |
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| | ||||||||||||||||||||||| ||||||||||||||||||||||| ||| | |||||| |||||||||||||||||| ||| |||||||||| |
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| T |
41343335 |
tcttcaggataaaggagttcaatgtcctctgagttgtgttgtttgtgatggtcctcccgaagatgtgcatcatgttttctttggctgtccctttgcggtg |
41343434 |
T |
|
| Q |
484 |
caggtgtggcttagagctgg |
503 |
Q |
| |
|
|| || ||| |||||||||| |
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|
| T |
41343435 |
caagtttggattagagctgg |
41343454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 407
Target Start/End: Complemental strand, 25828276 - 25828219
Alignment:
| Q |
350 |
gaatgtgtagagggtgttttcctacccgtgttcgtttacaggataaaggagttcaatg |
407 |
Q |
| |
|
|||||||| |||| ||||| ||||| || |||||||||||||||||||| || ||||| |
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|
| T |
25828276 |
gaatgtgtcgaggttgtttgcctacacgagttcgtttacaggataaaggtgtccaatg |
25828219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 411
Target Start/End: Original strand, 26131012 - 26131080
Alignment:
| Q |
343 |
atttggcgaatgtgtagagggtgttttcctacccgtgttcgtttacaggataaaggagttcaatgtccc |
411 |
Q |
| |
|
||||||||||||||| | |||||||| |||||| | ||||| | || ||||||||||| ||||||||| |
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|
| T |
26131012 |
atttggcgaatgtgtcgtgggtgtttgcctacctgagttcggcttcaagataaaggagtgcaatgtccc |
26131080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 8e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 357 - 506
Target Start/End: Original strand, 8273770 - 8273919
Alignment:
| Q |
357 |
tagagggtgttttcctacccgtgttcgtttacaggataaaggagttcaatgtcccctgagttgtgttgtttgtgatggaccttctgaagatatgcatcat |
456 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
8273770 |
tagagggtgctttcctacccgtgttcgtctacaggataaaggagttcaatgtcccctgagttgtgttgtttgcgatggaccttccaaagatgtgcatcat |
8273869 |
T |
|
| Q |
457 |
gttttctttgattgttcctttgcggtacaggtgtggcttagagctgggct |
506 |
Q |
| |
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||||||||||| ||| |||||||||| || || ||||||||||||||||| |
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| T |
8273870 |
gttttctttgactgtccctttgcggtgcaagtatggcttagagctgggct |
8273919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 36488957 - 36488917
Alignment:
| Q |
211 |
aaaggactatattcagtcaaaagtgcttattgactttgtgt |
251 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||| ||||||| |
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| T |
36488957 |
aaaggtctatatttagtcaaaagtgcttattgagtttgtgt |
36488917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 246 - 497
Target Start/End: Original strand, 8858649 - 8858900
Alignment:
| Q |
246 |
ttgtgtggaggagttgatcgatactgctcatctgcggtgagctggatattggtctaggatttggtggttaaaagttccaccaaagaataaaaatataatt |
345 |
Q |
| |
|
||||||||| || ||||| |||| | ||||| | ||| |||| ||| |||||||| ||||||| |||||| |||||| | |||| ||||||| |||| |
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|
| T |
8858649 |
ttgtgtggaagatttgattgatatttctcatttacggagagccggaaattggtctgggatttgcaggttaagagttcctctgaagattaaaaatctaatc |
8858748 |
T |
|
| Q |
346 |
tggcgaatgtgtagagggtgttttcctacccgtgttcgtttacaggataaaggagttcaatgtcccctgagttgtgttgtttgtgatggaccttctgaag |
445 |
Q |
| |
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||| | ||||||||||||||| | || | |||||||||||| |||||||||||||||| |||||| || |||||| || |||| |||||||| ||||||| |
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| T |
8858749 |
tggtgtatgtgtagagggtgtctccccatccgtgttcgttttcaggataaaggagttccatgtcctctaagttgtattttttgcgatggaccgtctgaag |
8858848 |
T |
|
| Q |
446 |
atatgcatcatgttttctttgattgttcctttgcggtacaggtgtggcttag |
497 |
Q |
| |
|
|| | |||||||||||||||||||| || ||| ||| ||||||||| |||| |
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|
| T |
8858849 |
atcttcatcatgttttctttgattgctcttttttggtgcaggtgtggtttag |
8858900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 73 - 223
Target Start/End: Original strand, 8858500 - 8858650
Alignment:
| Q |
73 |
ttaattcacactcattctaagacgtggaacgtggaggtcattcatcaagtgtttgatgatgcatcggctgcatccattttacaaactttcttgtttgagc |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| | ||| |||||||||||| ||||||| |||| |||||| |
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|
| T |
8858500 |
ttaattcacactcattctaagacgtggaacgtagaggtcattcaccaagtgttcaatgatacctcgactgcatccatttcacaaactcccttgattgagc |
8858599 |
T |
|
| Q |
173 |
aagtgactgatgatgctttgctttggaaggcggagaggaaaggactatatt |
223 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||||||||| | || ||||||| |
|
|
| T |
8858600 |
aagtgactgaggatcctttgatttggaaggcggagagggatggtctatatt |
8858650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 425 - 500
Target Start/End: Complemental strand, 11153094 - 11153019
Alignment:
| Q |
425 |
tttgtgatggaccttctgaagatatgcatcatgttttctttgattgttcctttgcggtacaggtgtggcttagagc |
500 |
Q |
| |
|
|||| |||||||| ||||||||| | |||||||||||||||||||| || ||| ||| ||||||||| ||||||| |
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|
| T |
11153094 |
tttgcgatggaccgtctgaagatcttcatcatgttttctttgattgctcttttttggtgcaggtgtggtttagagc |
11153019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 411
Target Start/End: Original strand, 20247374 - 20247442
Alignment:
| Q |
343 |
atttggcgaatgtgtagagggtgttttcctacccgtgttcgtttacaggataaaggagttcaatgtccc |
411 |
Q |
| |
|
||||||||||||||| | |||||||| |||||||| ||||| | || ||||||||||| ||||||||| |
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|
| T |
20247374 |
atttggcgaatgtgtcgtgggtgtttgcctacccgagttcggcttcaagataaaggagtgcaatgtccc |
20247442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 384
Target Start/End: Original strand, 9958381 - 9958449
Alignment:
| Q |
316 |
aaagttccaccaaagaataaaaatataatttggcgaatgtgtagagggtgttttcctacccgtgttcgt |
384 |
Q |
| |
|
||||||||||| ||| ||| ||| |||||||||| |||||| |||| ||||| || |||||||||||| |
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|
| T |
9958381 |
aaagttccaccgaaggttaagaatttaatttggcgtatgtgtcgaggatgtttaccaacccgtgttcgt |
9958449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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