View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2351_low_6 (Length: 520)

Name: NF2351_low_6
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2351_low_6
NF2351_low_6
[»] chr8 (4 HSPs)
chr8 (98-511)||(5840710-5841116)
chr8 (114-511)||(5846875-5847269)
chr8 (304-403)||(29490443-29490542)
chr8 (396-457)||(21136573-21136634)
[»] chr4 (7 HSPs)
chr4 (30-90)||(53045442-53045502)
chr4 (190-349)||(55264491-55264651)
chr4 (294-411)||(55397428-55397545)
chr4 (189-348)||(39051192-39051348)
chr4 (371-424)||(7402978-7403031)
chr4 (192-241)||(45921833-45921882)
chr4 (201-278)||(53924446-53924523)
[»] chr2 (5 HSPs)
chr2 (201-348)||(17658871-17659018)
chr2 (190-348)||(32502872-32503030)
chr2 (201-318)||(8033572-8033689)
chr2 (44-84)||(15962489-15962529)
chr2 (304-405)||(22191420-22191521)
[»] chr7 (2 HSPs)
chr7 (192-310)||(32296325-32296443)
chr7 (298-362)||(32296376-32296440)
[»] chr5 (2 HSPs)
chr5 (192-345)||(9900260-9900413)
chr5 (368-425)||(11275792-11275849)
[»] chr3 (8 HSPs)
chr3 (262-432)||(33429017-33429187)
chr3 (293-362)||(16298273-16298342)
chr3 (284-343)||(47337225-47337284)
chr3 (290-409)||(1163419-1163538)
chr3 (368-467)||(45965808-45965907)
chr3 (201-268)||(47337245-47337312)
chr3 (190-280)||(29504829-29504919)
chr3 (254-299)||(33428927-33428972)
[»] chr6 (6 HSPs)
chr6 (188-260)||(17437678-17437750)
chr6 (296-412)||(17437556-17437670)
chr6 (202-265)||(23765853-23765916)
chr6 (224-348)||(21394358-21394476)
chr6 (201-287)||(3889973-3890059)
chr6 (369-410)||(19121887-19121928)
[»] chr1 (6 HSPs)
chr1 (281-362)||(8793048-8793129)
chr1 (368-412)||(7790415-7790459)
chr1 (201-320)||(15395318-15395437)
chr1 (221-318)||(845079-845176)
chr1 (254-318)||(17347127-17347190)
chr1 (226-299)||(40649818-40649891)
[»] scaffold0050 (1 HSPs)
scaffold0050 (284-348)||(82111-82175)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 98 - 511
Target Start/End: Original strand, 5840710 - 5841116
Alignment:
Q  98 gtattgttccccagctcttttactgcacttctgctgcgggggg-cttttgataaataaatattgcttttttnnnnnnnnnnnnnnnnnntgtctgtcttt 196  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||                  ||| |||||||    
T  5840710 gtattgttccccagctcttttactgcacttctgctgcgggggggcttttgataaataaatattg-ttttttcaaaaaaaataaaaaaaatgtatgtcttt 5840808  T
Q  197 gtttaaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagatatgaactatgttgaaat 296  Q
    ||||||||||||||||||| |||||||||              ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5840809 gtttaaagtttttcaattaggtcattgtc--------------acgtaatgaaggacttaattgagaaacttctaacaaagatatgaactatgttgaaat 5840894  T
Q  297 attgtcgaaagtttttcaattagatctctttctc--tttatttttgtcacatgatgaagaatttaattctgacacttttgataaagatagaaactaaatt 394  Q
    |||||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  5840895 attgtcgaaagtttctcaattagatctctttctctctttatttttgtcacatgatgaagaacttaattcagacacttttgataaagatagaaactaaatt 5840994  T
Q  395 aaaatattaatagagtcaaaaactattttgaaagtgacattaaaaaactgagactaatttaatagtttactcgataataaaggtatcat-----ttactt 489  Q
    ||||||||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||||||||||||||||||||||||||| |||     ||||||    
T  5840995 aaaatattaatagagtcaaaaactattttgaaagtgacatacaaagactgagattaatttaatagtttactcgataataaaggtaacatttaagttactt 5841094  T
Q  490 tagtctccatggtgttgtctgt 511  Q
    ||||||||||||||||||||||    
T  5841095 tagtctccatggtgttgtctgt 5841116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 114 - 511
Target Start/End: Original strand, 5846875 - 5847269
Alignment:
Q  114 cttttactgcacttctgctgcggggggcttttgataaataaatattgcttttttnnnnnnnnnnnnnnnnnntgtctgtctttgtttaaagtttttcaat 213  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||                   ||||||||||||||||||||||||||||    
T  5846875 cttttactgcacttctgctgcgggggggctttgataaataaatattgcttttt---caaaaaaaaaaaaaaatgtctgtctttgtttaaagtttttcaat 5846971  T
Q  214 taagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagatatgaactatgttgaaatattgtcgaaagtttttc 313  Q
    || |||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| ||    
T  5846972 taggtcattgtctctatgtttttgtcacgtaatgagggacttaattgagaaatttctaataaagatatgaactatgttgaaatattgtcgaaagtttctc 5847071  T
Q  314 aattagatctctt--tctctttatttttgtcacatgatgaagaatttaattctgacacttttgataaagatagaaactaaattaaaatattaatagagtc 411  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5847072 aattagatctctttctctctttatttttgtcacatgatgaagaacttaattcagacacttttgataaagatagaaactaaattaaaatattaatagagtc 5847171  T
Q  412 aaaaactattttgaaagtgacattaaaaaactgagactaatttaatagtttactcgataataaaggtatcat-----ttactttagtctccatggtgttg 506  Q
    |||||||||||||| ||||||        ||  ||||||||||||| |||||| |||||||||||||| |||     |||||||||||||||||||||||    
T  5847172 aaaaactattttgagagtgac-------gacatagactaatttaatggtttacgcgataataaaggtaacatttaagttactttagtctccatggtgttg 5847264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 403
Target Start/End: Original strand, 29490443 - 29490542
Alignment:
Q  304 aaagtttttcaattagatctctttctctttatttttgtcacatgatgaagaatttaattctgacacttttgataaagatagaaactaaattaaaatatta 403  Q
    ||||||| |||||||||||||| ||||| | |||||| ||||||| ||   ||||| ||  || |||||||||||||||||| ||||  || ||||||||    
T  29490443 aaagtttctcaattagatctctgtctctgtgtttttggcacatgacgagacatttatttgagaaacttttgataaagatagacactattttgaaatatta 29490542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Complemental strand, 21136634 - 21136573
Alignment:
Q  396 aaatattaatagagtcaaaaactattttgaaagtgacattaaaaaactgagactaatttaat 457  Q
    ||||||||||||||||||| |||| ||||| | |||| |||||| || ||||| ||||||||    
T  21136634 aaatattaatagagtcaaagactaatttgagaatgactttaaaagacagagacaaatttaat 21136573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 30 - 90
Target Start/End: Original strand, 53045442 - 53045502
Alignment:
Q  30 aggagcatcttataggaacatggattggaaagaacagtgttgaggtgaaagatttatagta 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53045442 aggagcatcttataggaacatggattggaaagaacagtgttgaggtgaaagatttatagta 53045502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 349
Target Start/End: Complemental strand, 55264651 - 55264491
Alignment:
Q  190 tgtctttgtttaaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagatatgaactatg 289  Q
    |||||||||  ||||||| |||||||| ||   ||||||||||||||||||| |    | ||||||||||| ||||||| | ||||||| ||  |||||     
T  55264651 tgtctttgtcaaaagtttctcaattaattccccgtctctatgtttttgtcacatggatatggacttaattgagaaacttttgacaaagacattgactatt 55264552  T
Q  290 ttgaaatattgtcgaaagtttttcaattagatctctttctctt-tatttttgtcacatgat 349  Q
    ||||||||||||| ||||||| |||||||||  |||||||||| | |||||||||||||||    
T  55264551 ttgaaatattgtcaaaagtttctcaattagacttctttctcttctttttttgtcacatgat 55264491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 411
Target Start/End: Complemental strand, 55397545 - 55397428
Alignment:
Q  294 aatattgtcgaaagtttttcaattagatctctttctctttatttttgtcacatgatgaagaatttaattctgacacttttgataaagatagaaactaaat 393  Q
    ||||||||| |||||| ||  ||||||||  ||||||||| ||||||||||||||||| | ||| ||||   | |||||| | ||||||| ||||||  |    
T  55397545 aatattgtcaaaagttcttacattagatccatttctctttgtttttgtcacatgatgagggattaaattaaaaaacttttaacaaagataaaaactattt 55397446  T
Q  394 taaaatattaatagagtc 411  Q
    ||||||||||||| ||||    
T  55397445 taaaatattaataaagtc 55397428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 348
Target Start/End: Complemental strand, 39051348 - 39051192
Alignment:
Q  189 ctgtctttgtttaaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatga-aggacttaattgggaaacttctaacaaagatatgaacta 287  Q
    ||||||||||  ||||||| |||||||  ||||||||| |||||||||||| |   |||| | |||||||||| ||||||| | |  |||| |   ||||    
T  39051348 ctgtctttgtcaaaagtttctcaattagatcattgtctttatgtttttgtcgc---atgacaagacttaattgagaaacttttgatcaagacagagacta 39051252  T
Q  288 tgttgaaatattgtcgaaagtttttcaattagatctctttctctttatttttgtcacatga 348  Q
    | |||||||||| || ||||||| |||| ||||||||| ||| | ||||||||||||||||    
T  39051251 ttttgaaatattatc-aaagtttctcaactagatctctgtctatatatttttgtcacatga 39051192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 424
Target Start/End: Complemental strand, 7403031 - 7402978
Alignment:
Q  371 tttgataaagatagaaactaaattaaaatattaatagagtcaaaaactattttg 424  Q
    ||||||||||| ||| ||||| |||||||||||||||||||  |||||| ||||    
T  7403031 tttgataaagaaagagactaatttaaaatattaatagagtcggaaactaatttg 7402978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 45921882 - 45921833
Alignment:
Q  192 tctttgtttaaagtttttcaattaagtcattgtctctatgtttttgtcac 241  Q
    |||||||  ||||||| ||||||| |||||||||| ||||||||||||||    
T  45921882 tctttgtcaaaagtttatcaattaggtcattgtctttatgtttttgtcac 45921833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 278
Target Start/End: Complemental strand, 53924523 - 53924446
Alignment:
Q  201 aaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaaga 278  Q
    |||||||||||||||  ||||||||| |||||||||||||| |  ||| | || |||||| ||||||| | |||||||    
T  53924523 aaagtttttcaattagatcattgtctttatgtttttgtcacatggtgaggaacgtaattgagaaacttttgacaaaga 53924446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 201 - 348
Target Start/End: Complemental strand, 17659018 - 17658871
Alignment:
Q  201 aaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagatatgaactatgttgaaatattg 300  Q
    |||||||||||||||  || || ||||| |||||||||||| | | ||  |||||  |||  |||||| | ||||||||||  ||||| |||||||||||    
T  17659018 aaagtttttcaattagatcgttttctctttgtttttgtcacttgacgagagacttggttgaaaaacttttgacaaagatattgactattttgaaatattg 17658919  T
Q  301 tcgaaagtttttcaattagatctctttctctttatttttgtcacatga 348  Q
    || |||  ||||||||||||||  ||||||||| ||||||||||||||    
T  17658918 tcaaaatcttttcaattagatcattttctctttgtttttgtcacatga 17658871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 190 - 348
Target Start/End: Original strand, 32502872 - 32503030
Alignment:
Q  190 tgtctttgtttaaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagatatgaactatg 289  Q
    |||||||||| || |||| |||||||  |||||||||||||||||||||||| | | ||   | |||||||  ||| || | ||||||| |   |||||     
T  32502872 tgtctttgttaaatgtttctcaattagatcattgtctctatgtttttgtcacatgacgagacatttaattgaaaaaattttgacaaagacaaagactatt 32502971  T
Q  290 ttgaaatattgtcgaaagtttttcaattagatctctttctctttatttttgtcacatga 348  Q
    |||||||||| || ||||||| |||||||||||||| ||||| | ||||| ||| ||||    
T  32502972 ttgaaatattatcaaaagtttatcaattagatctctgtctctatgtttttatcatatga 32503030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 201 - 318
Target Start/End: Complemental strand, 8033689 - 8033572
Alignment:
Q  201 aaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagatatgaactatgttgaaatattg 300  Q
    |||||||||||||||  |   |||||||||||||||||||  | | ||  |||||||||| ||||||| ||||||||| | | | ||| |||||| ||||    
T  8033689 aaagtttttcaattagatacatgtctctatgtttttgtcatatgacgagagacttaattgagaaacttttaacaaagacaaggattattttgaaagattg 8033590  T
Q  301 tcgaaagtttttcaatta 318  Q
    || ||||||| |||||||    
T  8033589 tcaaaagtttctcaatta 8033572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 15962529 - 15962489
Alignment:
Q  44 ggaacatggattggaaagaacagtgttgaggtgaaagattt 84  Q
    ||||| ||||| |||||||||||||||||||||||||||||    
T  15962529 ggaacgtggataggaaagaacagtgttgaggtgaaagattt 15962489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 405
Target Start/End: Complemental strand, 22191521 - 22191420
Alignment:
Q  304 aaagtttttcaattagatctctttctctttatttttgtcacatgatgaagaatttaattctgacacttttgataaagatagaaactaaattaaaatatta 403  Q
    ||||||||||||||||||   | |||||||||||||||||||||| || | | |||||   || |||||||| ||||| | | ||||  |||||||||||    
T  22191521 aaagtttttcaattagattcatatctctttatttttgtcacatgacgagggacttaatagagaaacttttgacaaagacaaagactattttaaaatatta 22191422  T
Q  404 at 405  Q
    ||    
T  22191421 at 22191420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 192 - 310
Target Start/End: Complemental strand, 32296443 - 32296325
Alignment:
Q  192 tctttgtttaaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagatatgaactatgtt 291  Q
    |||||||  |||||||||||||||  ||||||||||||||||||||||||   ||||| || ||||||| ||||||| ||||||| |||  || ||| ||    
T  32296443 tctttgtcaaaagtttttcaattagatcattgtctctatgtttttgtcacacgatgaatgatttaattgagaaacttttaacaaatatacaaattatttt 32296344  T
Q  292 gaaatattgtcgaaagttt 310  Q
     |||||||||| |||||||    
T  32296343 aaaatattgtcaaaagttt 32296325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 32296440 - 32296376
Alignment:
Q  298 ttgtcgaaagtttttcaattagatctctttctctttatttttgtcacatgatgaagaatttaatt 362  Q
    ||||| |||||||||||||||||||  | ||||| | ||||||||||| ||||||  ||||||||    
T  32296440 ttgtcaaaagtttttcaattagatcattgtctctatgtttttgtcacacgatgaatgatttaatt 32296376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 192 - 345
Target Start/End: Original strand, 9900260 - 9900413
Alignment:
Q  192 tctttgtttaaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagatatgaactatgtt 291  Q
    |||||||  ||||||| |||||||  || |||| |||||||||||||||| |    | ||| ||||||| |||| || | ||||| | ||||||||| ||    
T  9900260 tctttgtcaaaagtttctcaattagatctttgtatctatgtttttgtcacatgtcaagggatttaattgagaaatttttgacaaaaacatgaactatttt 9900359  T
Q  292 gaaatattgtcgaaagtttttcaattagatctctttctctttatttttgtcaca 345  Q
    || |||||||| ||||||| || ||||||||||||||||||| ||||| |||||    
T  9900360 gagatattgtccaaagtttctcgattagatctctttctctttgtttttatcaca 9900413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 425
Target Start/End: Original strand, 11275792 - 11275849
Alignment:
Q  368 acttttgataaagatagaaactaaattaaaatattaatagagtcaaaaactattttga 425  Q
    |||||||| ||| ||||||||||| |||||||||||||| ||||| | |||| |||||    
T  11275792 acttttgacaaatatagaaactaatttaaaatattaataaagtcagagactaatttga 11275849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 432
Target Start/End: Original strand, 33429017 - 33429187
Alignment:
Q  262 gaaacttctaacaaagatatgaactatgttgaaatattgtcgaaagtttttcaattagatctctttctctttatttttgtcacatgatgaagaatttaat 361  Q
    ||||||| | |||||||  | |||||| ||||||||||||| || |||| ||||||||||   ||||||||| |||||||||||||| |||  | |||||    
T  33429017 gaaacttttgacaaagacgtaaactattttgaaatattgtcaaatgtttctcaattagattcatttctctttgtttttgtcacatgacgaaagacttaat 33429116  T
Q  362 tctgacacttttgataaagatagaaactaaattaaaatattaatagagtcaaaaactattttgaaagtgac 432  Q
    |   | ||||||||||||||||   | ||  ||||||||||||||||||  |  |||| ||||||||||||    
T  33429117 tgaaaaacttttgataaagatattgattattttaaaatattaatagagttgatgactaatttgaaagtgac 33429187  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 293 - 362
Target Start/End: Complemental strand, 16298342 - 16298273
Alignment:
Q  293 aaatattgtcgaaagtttttcaattagatctctttctctttatttttgtcacatgatgaagaatttaatt 362  Q
    |||||||||| |||||||||||||||||||  | ||||| ||||||||||| ||||||| | ||||||||    
T  16298342 aaatattgtccaaagtttttcaattagatcaatgtctctatatttttgtcatatgatgagggatttaatt 16298273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 343
Target Start/End: Original strand, 47337225 - 47337284
Alignment:
Q  284 actatgttgaaatattgtcgaaagtttttcaattagatctctttctctttatttttgtca 343  Q
    ||||| ||||||||||||| ||||||||||||||||||| || ||||| | |||||||||    
T  47337225 actattttgaaatattgtcaaaagtttttcaattagatccctgtctctatgtttttgtca 47337284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 409
Target Start/End: Complemental strand, 1163538 - 1163419
Alignment:
Q  290 ttgaaatattgtcgaaagtttttcaattagatctctttctctttatttttgtcacatgatgaagaatttaattctgacacttttgataaagatagaaact 389  Q
    |||||||| |||| ||||||||||||||||| || | | ||| ||||||| |||||||| ||   | ||||||  || |||||||| ||| | | |||||    
T  1163538 ttgaaatactgtcaaaagtttttcaattagacctatgtttctatatttttttcacatgacgagagacttaattgagaaacttttgacaaacacataaact 1163439  T
Q  390 aaattaaaatattaatagag 409  Q
    |  |||||||||||||||||    
T  1163438 attttaaaatattaatagag 1163419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 467
Target Start/End: Original strand, 45965808 - 45965907
Alignment:
Q  368 acttttgataaagatagaaactaaattaaaatattaatagagtcaaaaactattttgaaagtgacattaaaaaactgagactaatttaatagtttactcg 467  Q
    |||||||| |||||||  |||||  || ||||||||||||||||| |||||| ||||| |||||| |  ||| || | ||| ||||| ||||||||||||    
T  45965808 acttttgaaaaagataataactagtttgaaatattaatagagtcacaaactaatttgagagtgacttacaaatacagggaccaatttgatagtttactcg 45965907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 47337245 - 47337312
Alignment:
Q  201 aaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaactt 268  Q
    |||||||||||||||  ||  |||||||||||||||||||  ||| || ||||||||||| |||||||    
T  47337245 aaagtttttcaattagatccctgtctctatgtttttgtcatataacgagggacttaattgagaaactt 47337312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 190 - 280
Target Start/End: Original strand, 29504829 - 29504919
Alignment:
Q  190 tgtctttgtttaaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagata 280  Q
    ||||||| || ||||||||||||||| |||| ||||| |||| ||||||||| | | || ||||  ||| | ||||||| |||||||||||    
T  29504829 tgtctttattaaaagtttttcaattaggtcaatgtctttatgcttttgtcacatgacgagggaccaaatcgagaaacttttaacaaagata 29504919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 33428972 - 33428927
Alignment:
Q  254 ttaattgggaaacttctaacaaagatatgaactatgttgaaatatt 299  Q
    ||||||| ||||||| | ||||||||||||||||| ||||||||||    
T  33428972 ttaattgagaaacttttgacaaagatatgaactattttgaaatatt 33428927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 188 - 260
Target Start/End: Complemental strand, 17437750 - 17437678
Alignment:
Q  188 tctgtctttgtttaaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattg 260  Q
    |||||||||||| ||||||| |||||||  || ||||||||||||||||||||| ||| || |||||||||||    
T  17437750 tctgtctttgttaaaagtttctcaattagatctttgtctctatgtttttgtcacataaggagggacttaattg 17437678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 412
Target Start/End: Complemental strand, 17437670 - 17437556
Alignment:
Q  296 tattgtcgaaagtttttcaattagatctctttctctttatttttgtcacatgatgaagaatttaattctgacacttttgataaagatagaaactaaatta 395  Q
    ||||||| ||||||||||||||| || | |||||  || |||||||||||||| ||||   ||||||  || |||||||||||||| | | ||||||||     
T  17437670 tattgtcaaaagtttttcaattaaatatatttct--ttgtttttgtcacatgacgaaggccttaattgagaaacttttgataaagacaaagactaaattg 17437573  T
Q  396 aaatattaatagagtca 412  Q
    | |||||||||||||||    
T  17437572 atatattaatagagtca 17437556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 202 - 265
Target Start/End: Original strand, 23765853 - 23765916
Alignment:
Q  202 aagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaa 265  Q
    |||||||||||||| |||||||||| |||||||||||||| | || | ||||||||||| ||||    
T  23765853 aagtttttcaattaggtcattgtctttatgtttttgtcacatgataagggacttaattgagaaa 23765916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 224 - 348
Target Start/End: Complemental strand, 21394476 - 21394358
Alignment:
Q  224 tctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagatatgaactatgttgaaatattgtcgaaagtttttcaattagatct 323  Q
    ||||||||||||| |||| | | || | ||||||||| ||||||| |||||||||      |||| ||||||||||||| ||||||| ||||||| |||     
T  21394476 tctctatgtttttatcacatgacgaggtacttaattgagaaacttttaacaaaga------ctattttgaaatattgtcaaaagtttctcaattacatca 21394383  T
Q  324 ctttctctttatttttgtcacatga 348  Q
    || ||||  | ||||||||||||||    
T  21394382 ctgtctcggtctttttgtcacatga 21394358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 287
Target Start/End: Original strand, 3889973 - 3890059
Alignment:
Q  201 aaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagatatgaacta 287  Q
    ||||||| ||||||| ||| ||||||  |||||||||||||  || || |||| |||||| ||||||| | ||||||| ||||||||    
T  3889973 aaagtttctcaattaggtccttgtcttcatgtttttgtcacacaacgagggacctaattgagaaacttttgacaaagacatgaacta 3890059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 19121928 - 19121887
Alignment:
Q  369 cttttgataaagatagaaactaaattaaaatattaatagagt 410  Q
    ||||||| ||||||||||||||  ||||||||||||||||||    
T  19121928 cttttgacaaagatagaaactagtttaaaatattaatagagt 19121887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 362
Target Start/End: Complemental strand, 8793129 - 8793048
Alignment:
Q  281 tgaactatgttgaaatattgtcgaaagtttttcaattagatctctttctctttatttttgtcacatgatgaagaatttaatt 362  Q
    |||||||| |||||||||| || ||||||| ||||||| ||| |||| ||||| |||||||||||||| |||| | ||||||    
T  8793129 tgaactattttgaaatattatcaaaagtttctcaattatatccctttttctttgtttttgtcacatgacgaaggacttaatt 8793048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 7790415 - 7790459
Alignment:
Q  368 acttttgataaagatagaaactaaattaaaatattaatagagtca 412  Q
    |||||||||||||||||||||||| || |||||||||||||||||    
T  7790415 acttttgataaagatagaaactaatttgaaatattaatagagtca 7790459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 201 - 320
Target Start/End: Complemental strand, 15395437 - 15395318
Alignment:
Q  201 aaagtttttcaattaagtcattgtctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagatatgaactatgttgaaatattg 300  Q
    ||||||||||||||| |||   |||||||||||||||| || ||  |||  ||||||||| ||||||| | | ||||| ||||||||  |||||||||||    
T  15395437 aaagtttttcaattaggtctccgtctctatgtttttgttacatagcgaaacacttaattgagaaacttttgataaagacatgaactactttgaaatattg 15395338  T
Q  301 tcgaaagtttttcaattaga 320  Q
    || ||  ||| |||||||||    
T  15395337 tcaaatttttctcaattaga 15395318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 221 - 318
Target Start/End: Original strand, 845079 - 845176
Alignment:
Q  221 ttgtctctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagatatgaactatgttgaaatattgtcgaaagtttttcaatta 318  Q
    ||||||||||||||||||||| | ||||   ||||||||| ||||||||| ||||||| |   | ||| |||||||||| || ||||||| |||||||    
T  845079 ttgtctctatgtttttgtcacatgatgagacacttaattgagaaacttctgacaaagacaaatattattttgaaatattatcaaaagtttctcaatta 845176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 17347190 - 17347127
Alignment:
Q  254 ttaattgggaaacttctaacaaagatatgaactatgttgaaatattgtcgaaagtttttcaatta 318  Q
    ||||||| ||||||| ||||||||| || |||||| ||| |||||| ||||||||||||||||||    
T  17347190 ttaattgagaaactt-taacaaagacataaactattttgtaatattatcgaaagtttttcaatta 17347127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 40649891 - 40649818
Alignment:
Q  226 tctatgtttttgtcacgtaatgaaggacttaattgggaaacttctaacaaagatatgaactatgttgaaatatt 299  Q
    ||||||||||| |||| | | || ||||||||||| ||||||| ||||||||| ||| || || ||||||||||    
T  40649891 tctatgtttttttcacatgacgagggacttaattgagaaacttttaacaaagacatgtaccattttgaaatatt 40649818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 82111 - 82175
Alignment:
Q  284 actatgttgaaatattgtcgaaagtttttcaattagatctctttctctttatttttgtcacatga 348  Q
    ||||| ||||||||||||| ||||||| |||||||||||  | ||||  | ||||||||||||||    
T  82111 actattttgaaatattgtcaaaagtttctcaattagatcattgtctcaatttttttgtcacatga 82175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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