View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2351_low_7 (Length: 467)
Name: NF2351_low_7
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 466
Target Start/End: Complemental strand, 36335704 - 36335256
Alignment:
| Q |
11 |
cacagaataggcagaagttcaataaatctgtctctcatgatggaaagtttaaaccttatttgtaacatgatatgatatcctacgatgcttctccttaatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36335704 |
cacagaataggcagaagttcaataaatctgtctctcatgatggaaagtttaaaccttatttgtaacatgatatgatatcctacgatgcttctccttaatg |
36335605 |
T |
|
| Q |
111 |
taaaataaaaatttcacaagtggttaatcgaagtgttttcttattgcactataaaaatatacttataatatgtattgtgagtgtcaatcattttatacat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36335604 |
taaaataaaaatttcacaagtggttaatcgaagtgttttcttattgcactataaaaatatacttataatatgtattgtgagtgtcaatcattttatacat |
36335505 |
T |
|
| Q |
211 |
cgcattatactaagaaggaaatttactttttaatgtatataagaaaaacagctctggtgtggtgtataatgaagtctctttgaacccgacacttttgatt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | | | |||||||||||||||||||||||||||| |
|
|
| T |
36335504 |
cgcattatactaagaaggaaatttactttttaatgtatataagaaaaacagctctagtgtataatgt-aggcagtctctttgaacccgacacttttgatt |
36335406 |
T |
|
| Q |
311 |
agatgtgtgttcaacgtccgacatgtgttggtgtcagacacagacaccaacacatacggatataattacgtttgattaattaattttctcaaatttatca |
410 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36335405 |
agatgtgtgttcaacgtccaacatgtgttggtgt------cagacaccaacacatacggatataattacgttggattaattaattttctcaaatttatca |
36335312 |
T |
|
| Q |
411 |
gtgtcgatgtgttagtgtcattactcattatcatgtccgtgtctgtggtgctgctc |
466 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
36335311 |
gtgtcgatgtgttagtgtcattactcattatcatgtccgtgtctgtgttactgctc |
36335256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University