View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2351_low_8 (Length: 360)
Name: NF2351_low_8
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 97 - 278
Target Start/End: Complemental strand, 1455049 - 1454868
Alignment:
| Q |
97 |
gtaagcacgacgctaaacttccattagccattaaaggatacacaagcaaacgttcagtagatgtcacacaaaaaccacgaagacaaagcaaattacgatg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1455049 |
gtaagcacgacgctaaacttccattagccattaaaggatacacaagcaaacgttcagtagatgtcacacaaaaaccacgaagacaaagcaaattacgatg |
1454950 |
T |
|
| Q |
197 |
cacagccatgccgatcatttccacttctgtctgaaattgcagctccccaccctgttccccaccacgtgtgcgttcctctctg |
278 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1454949 |
cacagccatgccgatcatttcaacttctgtctgaaattgcagctccccaccctgttccccaccacgtgtgcgttcctctctg |
1454868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 97 - 249
Target Start/End: Complemental strand, 1448315 - 1448163
Alignment:
| Q |
97 |
gtaagcacgacgctaaacttccattagccattaaaggatacacaagcaaacgttcagtagatgtcacacaaaaaccacgaagacaaagcaaattacgatg |
196 |
Q |
| |
|
|||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| |
|
|
| T |
1448315 |
gtaaacacgatgctacacttccattagccattaaaggatacacaagcaaacgttcagtagatgttacgcaaaaaccacgaagacgaagcaaattacgatg |
1448216 |
T |
|
| Q |
197 |
cacagccatgccgatcatttccacttctgtctgaaattgcagctccccaccct |
249 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
1448215 |
cacagccatgccgatcatttctacttctgtctgaaattgcagctccccgccct |
1448163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 108 - 247
Target Start/End: Complemental strand, 1428945 - 1428806
Alignment:
| Q |
108 |
gctaaacttccattagccattaaaggatacacaagcaaacgttcagtagatgtcacacaaaaaccacgaagacaaagcaaattacgatgcacagccatgc |
207 |
Q |
| |
|
|||| ||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||| | |
|
|
| T |
1428945 |
gctacacttccattggccatgtaaggatacacaagcaaacgttcagtagatgtcatgcaaaatccacgaagccgaagcaaattacgatgcacagccatac |
1428846 |
T |
|
| Q |
208 |
cgatcatttccacttctgtctgaaattgcagctccccacc |
247 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1428845 |
tgatcatttccacttctgtttgaaattgcagctccccacc |
1428806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 108 - 247
Target Start/End: Complemental strand, 1440894 - 1440755
Alignment:
| Q |
108 |
gctaaacttccattagccattaaaggatacacaagcaaacgttcagtagatgtcacacaaaaaccacgaagacaaagcaaattacgatgcacagccatgc |
207 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| ||||||||||| || ||||||| |||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
1440894 |
gctacacttccattaaccattaaaggatacacgagcaaacgttcggtggatgtcatgcaaaaaccacgaagccgaagcaaattacgatgcacagccatgc |
1440795 |
T |
|
| Q |
208 |
cgatcatttccacttctgtctgaaattgcagctccccacc |
247 |
Q |
| |
|
||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1440794 |
tgattatttccacttctgtctggaattgcagctccccacc |
1440755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 113 - 240
Target Start/End: Complemental strand, 1435554 - 1435427
Alignment:
| Q |
113 |
acttccattagccattaaaggatacacaagcaaacgttcagtagatgtcacacaaaaaccacgaagacaaagcaaattacgatgcacagccatgccgatc |
212 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||| ||||| |||||| ||||||| | |||||||||| ||||||||||||||| |||| |
|
|
| T |
1435554 |
acttccattagccatgtaaggatacacaagcaagcgttcagtaggtgtcatgcaaaaatcacgaaggcgaagcaaattatgatgcacagccatgctgatc |
1435455 |
T |
|
| Q |
213 |
atttccacttctgtctgaaattgcagct |
240 |
Q |
| |
|
| ||| ||||| || ||||| ||||||| |
|
|
| T |
1435454 |
aattcaacttcagtttgaaactgcagct |
1435427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 43826928 - 43826981
Alignment:
| Q |
194 |
atgcacagccatgccgatcatttccacttctgtctgaaattgcagctccccacc |
247 |
Q |
| |
|
|||||||||||||| |||||| || ||||| |||||||| || ||||||||||| |
|
|
| T |
43826928 |
atgcacagccatgctgatcatctctacttcagtctgaaactgaagctccccacc |
43826981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University