View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2351_low_9 (Length: 354)
Name: NF2351_low_9
Description: NF2351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2351_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 352
Target Start/End: Original strand, 52947938 - 52948272
Alignment:
| Q |
20 |
tgtttttgtgttgttgttgcatgcggttttggtagagacgaagatgaaggtttattaacaaagtttatgtttctaaaatttgacagggatgagtgtgtca |
119 |
Q |
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| T |
52947938 |
tgtttttgtgttgttgttgcatgtggttttggtagagacgaagatgaaggtttattaacaaagtttatgtttctaaaatttgacagggatgagtgtgtca |
52948037 |
T |
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| Q |
120 |
gttgtatttcaccaagggggtgaatttgttagggactacattttgtattacactgggggtcaagaacacgtagt--taatgggattgatagggataggtg |
217 |
Q |
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||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52948038 |
attgtatttcaccatgggggtgaatttgttacggactatattttgtattacactgggggtcaagaacacgtagtagtaatgggattgatagggataggtg |
52948137 |
T |
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| Q |
218 |
gtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattgaagatgataaatacaaa |
317 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
52948138 |
gtgttacttcgaagcgactggtatactaaaagagttaggttatgatgatcaccttaagtatcatttatggtggtatgttattgaagatgataaatacaaa |
52948237 |
T |
|
| Q |
318 |
aggattgttgaagataatgacactgatatttttgg |
352 |
Q |
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||||||||||| |||||||||||||||||| |||| |
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| T |
52948238 |
aggattgttgatgataatgacactgatattgttgg |
52948272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 345
Target Start/End: Original strand, 31810722 - 31810866
Alignment:
| Q |
201 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
300 |
Q |
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| T |
31810722 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
31810821 |
T |
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| Q |
301 |
aagatgataaatacaaaaggattgttgaagataatgacactgata |
345 |
Q |
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| T |
31810822 |
aggatgacaagtatgtaaggattatagatgacaatgacactgata |
31810866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 193 - 345
Target Start/End: Original strand, 7797472 - 7797624
Alignment:
| Q |
193 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggta |
292 |
Q |
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|||||| |||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| |||||| |
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| T |
7797472 |
ttaatgagattgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattttgatcaccttaagtataggttatggtggta |
7797571 |
T |
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| Q |
293 |
tgttattgaagatgataaatacaaaaggattgttgaagataatgacactgata |
345 |
Q |
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| T |
7797572 |
tattattgaggatgacaagtatttaaggattatagatgacaatgacactgata |
7797624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 345
Target Start/End: Complemental strand, 30320491 - 30320347
Alignment:
| Q |
201 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
300 |
Q |
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||||||| ||| | |||||| ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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| T |
30320491 |
attgataaggacaagtggtgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
30320392 |
T |
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| Q |
301 |
aagatgataaatacaaaaggattgttgaagataatgacactgata |
345 |
Q |
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| T |
30320391 |
aggatgacaagtatgtaaggattatagatgacaatgacactgata |
30320347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 277
Target Start/End: Original strand, 19393467 - 19393551
Alignment:
| Q |
193 |
ttaatgggattgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagta |
277 |
Q |
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|||||| |||||||| ||| | |||||| ||||||||||||||| | ||| | ||||| ||||| |||||||||||||||||||| |
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| T |
19393467 |
ttaatgagattgataaggacaagtggtgctactttgaagctactaggatattgaaagatttaggatatgatgatcaccttaagta |
19393551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 201 - 345
Target Start/End: Original strand, 22055067 - 22055211
Alignment:
| Q |
201 |
attgatagggataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtatgttattg |
300 |
Q |
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||||||| ||| | ||| || ||||||||||||||||| ||| | ||||| ||||| ||| |||||||||||||||| | |||| ||||||| |||||| |
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| T |
22055067 |
attgataaggacaagtgttgctactttgaagctactgggatattgaaagatttaggatattctgatcaccttaagtataggttatggtggtatattattg |
22055166 |
T |
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| Q |
301 |
aagatgataaatacaaaaggattgttgaagataatgacactgata |
345 |
Q |
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| T |
22055167 |
aggatgacaagtatgtaaggattatagatgacaatgacactgata |
22055211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 293
Target Start/End: Complemental strand, 28430291 - 28430209
Alignment:
| Q |
211 |
ataggtggtgttactttgaagctactggtatactaaaagagttaggttatgatgatcaccttaagtatcgtttattgtggtat |
293 |
Q |
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|||||||| | || |||||||| |||||||| |||| |||| || ||||||||||| ||||||||||| |||| ||||||| |
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| T |
28430291 |
ataggtggagctattttgaagccactggtattttaaagcagtttggatatgatgatcatcttaagtatcgattatggtggtat |
28430209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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