View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2352_high_1 (Length: 505)
Name: NF2352_high_1
Description: NF2352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2352_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 481
Target Start/End: Original strand, 6314118 - 6314584
Alignment:
| Q |
18 |
ttcacaaacgacgccgtttcaagttcaaccactctttttccttacgatgatgtttcaatctccgagttaactcgtcaaatgactcactcatctctccaca |
117 |
Q |
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| T |
6314118 |
ttcacaaacgacgccgtttcaagttcaaccactctttttccttacgatgatgtttcaatctccgagttaactcgtcaaatgactcactcatctctccaca |
6314217 |
T |
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| Q |
118 |
acaaggtaacgnnnnnnnttcaacaataaaaa---ctataacactcaaacaaataaattataactgtgtttatttttcatagggtgtttttgagaatgga |
214 |
Q |
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| T |
6314218 |
acaaggtaacgaaaaaaattcaacaaaaaaaaaaacgataacactcaaaaaaataaattacaactgtgtttatttttcatagggtgtttttgagaatgga |
6314317 |
T |
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| Q |
215 |
agctacgcgaagagttcaagtggaaacgacaccgttttgaagcagaacttgcagaaagcgaggtttgatctgctacatgcagctgcaggagaagatgcaa |
314 |
Q |
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| T |
6314318 |
agctacgcgaagagttcaagtggaaacgacaccgttttgaagcagaacttgcagaaagcgaggtttgatctgctacatgcagctgcaggagaagatgcaa |
6314417 |
T |
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| Q |
315 |
gggttcatcgagctaagtacgaagaagaagaagctttttacggttttacccctaaaaactaccatggatttcatactcagaatcatcatcatcaacatgc |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6314418 |
gggttcatcgagctaagtacgaagaagaagaagctttttacggttttacccctaaaaaccaccatggatttcatactcagaatcatcatcatcaacatgc |
6314517 |
T |
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| Q |
415 |
aatttctcagacacagttacagtttcaaatcgctcaagtaataacaaaaacaaaaacatactcaaca |
481 |
Q |
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| T |
6314518 |
aatttctcagaaacagttacagtttcaaatcgctcaagtaataacaaaaacaaaaacatactcaaca |
6314584 |
T |
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