View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2352_low_11 (Length: 218)
Name: NF2352_low_11
Description: NF2352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2352_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 11591151 - 11590962
Alignment:
| Q |
12 |
agaagaaggaagaggaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctnnnnnnncatctacaact |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11591151 |
agaagaaggaagaggaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctaaaaaaacatctacaact |
11591052 |
T |
|
| Q |
112 |
accactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataat |
201 |
Q |
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| T |
11591051 |
accactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataat |
11590962 |
T |
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Target: chr4; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 11646516 - 11646705
Alignment:
| Q |
12 |
agaagaaggaagaggaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctnnnnnnncatctacaact |
111 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
11646516 |
agaagaaggaagaggaagagaagatgtaacaacaactacagaacgtagcagaacagaagagcatcaaaattcacctgatcctaaaaaaacatctacaact |
11646615 |
T |
|
| Q |
112 |
accactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataat |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11646616 |
accactgttgctgcagaaggaaccgaatctcaaacacaaaggaaagagcatgatgatgctgttagagcaaagataatgaagcttaataat |
11646705 |
T |
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