View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2352_low_3 (Length: 385)
Name: NF2352_low_3
Description: NF2352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2352_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 277
Target Start/End: Original strand, 30828869 - 30829123
Alignment:
| Q |
23 |
aggaagaggaagttgcggaaataagtgaggcatttcggagtatttaggaagggttatcatatagaagagatctgcccaatcaagcttctgctcctcacta |
122 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| |||| |||||||||||| ||||| |||| | ||||||||||||||| ||||| |||||||| |
|
|
| T |
30828869 |
aggaagaggaagttgtggaaacaagtgaggcattctagagtgtttaggaagggtagtcataaagaaaatatctgcccaatcaagtttctgttcctcactc |
30828968 |
T |
|
| Q |
123 |
acaaccaatgcttgtccaaatccctccatatgatggggagtttgccaaaactttttcttctctgacattggaaggttgaagaaatcttgagtctccaatt |
222 |
Q |
| |
|
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30828969 |
ataacaaatgcttgtccaaatccctccatatgatggggagtttgccaaaactttttcttctctgacattggaaggttgaagaaatcttgagtctccaatt |
30829068 |
T |
|
| Q |
223 |
ttactttctccaacaaggaaagactgattcgatggtttatcagctgttgtataat |
277 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30829069 |
ttactttctccaacaaggaaagactgattggatggtttatcagctgttgtataat |
30829123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 23 - 242
Target Start/End: Original strand, 30853760 - 30853979
Alignment:
| Q |
23 |
aggaagaggaagttgcggaaataagtgaggcatttcggagtatttaggaagggttatcatatagaagagatctgcccaatcaagcttctgctcctcacta |
122 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| |||| |||||||||||| ||||| |||| | |||||||||||||||||| || || ||||| |
|
|
| T |
30853760 |
aggaagaggaagttgtggaaacaagtgaggcattctagagtgtttaggaagggtagtcataaagaaaatatctgcccaatcaagcttttgttcatcactc |
30853859 |
T |
|
| Q |
123 |
acaaccaatgcttgtccaaatccctccatatgatggggagtttgccaaaactttttcttctctgacattggaaggttgaagaaatcttgagtctccaatt |
222 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
30853860 |
acaacaaatgcttgcccaaatccctccatatgttgaggagtttgccaaaactttttcttctctgacattggaaggttgaagaaatcttgagtctccaact |
30853959 |
T |
|
| Q |
223 |
ttactttctccaacaaggaa |
242 |
Q |
| |
|
|||||||||||| ||||||| |
|
|
| T |
30853960 |
ttactttctccaccaaggaa |
30853979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 30835803 - 30836017
Alignment:
| Q |
18 |
cttaaaggaagaggaagttgcggaaataagtgaggcatttcggagtatttaggaagggttatcatatagaagagatctgcccaatcaagcttctgctcct |
117 |
Q |
| |
|
||||||||| |||||||||| |||||||| ||||||||| |||| ||||||||||||| ||||||| || | ||||||||||||||| ||||| |||| |
|
|
| T |
30835803 |
cttaaaggatgaggaagttgtggaaataaatgaggcattctagagtgtttaggaagggttgtcatataaaacatatctgcccaatcaagtttctgttcct |
30835902 |
T |
|
| Q |
118 |
cactaacaaccaatgcttgtccaaatccctccatatgatggggagtttgccaaaactttttcttctctgacattggaaggttgaagaaatcttgagtctc |
217 |
Q |
| |
|
|||| | ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30835903 |
cactcataacaaatgcttgtccaaatccctccatatgttggggagtttgccaaaactttttcttctctgacattggaaggttgaagaaatcttgtatctc |
30836002 |
T |
|
| Q |
218 |
caattttactttctc |
232 |
Q |
| |
|
||| |||| |||||| |
|
|
| T |
30836003 |
caactttattttctc |
30836017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 30841183 - 30841404
Alignment:
| Q |
21 |
aaaggaagaggaagttgcggaaataagtgaggcatttcggagtatttaggaagggttatcatatagaagagatctgcccaatcaagcttctgctcctcac |
120 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| ||| ||||||||||||| ||||| |||| ||||||||||||||||| || || || |||| |
|
|
| T |
30841183 |
aaaggaagaggaagttgtggaaataagtgtggcattctcaagtgtttaggaagggttgtcataaagaaaagatctgcccaatcaagtttttgttcttcac |
30841282 |
T |
|
| Q |
121 |
taacaaccaatgcttgtccaaatccctccatatgatggggagtttgccaaaactttttcttctctgacattggaaggttgaagaaatcttgagtctccaa |
220 |
Q |
| |
|
| | ||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| | | |||| |
|
|
| T |
30841283 |
ttaaaacaaatgcttgtccaaatccctccatatgttgaggagtttgccaaaactttttcttctctgacattggaaggttgaaaaaatccataatttccat |
30841382 |
T |
|
| Q |
221 |
ttttactttctccaacaaggaa |
242 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30841383 |
ctttactttctccaacaaggaa |
30841404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 383
Target Start/End: Original strand, 30830906 - 30830981
Alignment:
| Q |
303 |
aaatgttagatgtagttatcaaatcactggactaaattcttttatttttgaaggaaggactagaaatgttaacaacctttg |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| |
|
|
| T |
30830906 |
aaatgttagatgtagttatcaaatcactggactaaa-----ttttttttgaaggaaggactataaatgttaacaacctttg |
30830981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University