View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2352_low_5 (Length: 328)
Name: NF2352_low_5
Description: NF2352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2352_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 42298389 - 42298087
Alignment:
| Q |
18 |
atatagtagtgaggcccgccttccgaatcaacatggattttagtacgaagagcatgattagagacatgaaagagttaatgacttcaattaattcatatcg |
117 |
Q |
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| T |
42298389 |
atatagtagtgaggcccgccttccgaatcaacatggattttagtacgaagaacatgattagagacatgaaagagttaatgacttcaattaattcatatcg |
42298290 |
T |
|
| Q |
118 |
aaggagctgcagtggctcctgatgtctgggacccttagagcgaacatggataatggtgagcaaaacatgaagggataaatgagaaaagacaacattgact |
217 |
Q |
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|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42298289 |
gaggagctgcattagctcctgatgtctgggacccttagagcgaacatggataatggtgagcaaaacatgaaggaataaatgagaaaagacaacattgact |
42298190 |
T |
|
| Q |
218 |
ttttcacaatggtagagcaaagatttggccaaatttaatgaaaccttctttaagtttttgtcgaccgaatatttgtgcttcatcaaggtatgtcattcat |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
42298189 |
ttttcataatggtagagcaaagatttggccaaatttaatgaaaccttctttaagtttttgtcgaccgaatatttgtgcttcatcaaggtatgtcattctt |
42298090 |
T |
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| Q |
318 |
ctc |
320 |
Q |
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||| |
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| T |
42298089 |
ctc |
42298087 |
T |
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