View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2352_low_8 (Length: 232)
Name: NF2352_low_8
Description: NF2352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2352_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 49008222 - 49008447
Alignment:
| Q |
1 |
ccaggaacactaatcttagcttcatggcctcaaaatgttccagcaacagagctgcaattccagaacaatctcttcaacaacttcaacttgttaagtggaa |
100 |
Q |
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| T |
49008222 |
ccaggaacactaatcttagcttcatggcctcaaaatgttccagcaacagagctgcaattccagaacaatctcttcaacaacttcaacttgttaagtggaa |
49008321 |
T |
|
| Q |
101 |
catcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagcccagcagccattagatcggctatgatgacaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49008322 |
catcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagcccagcagccattagatcggctatgatgacaac |
49008421 |
T |
|
| Q |
201 |
atcagacatgttagacaacacaaaag |
226 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
49008422 |
atcagacatgttagacaacacaaaag |
49008447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 218
Target Start/End: Complemental strand, 21687100 - 21686953
Alignment:
| Q |
71 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagccc |
170 |
Q |
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|||| ||||||||||| ||| || ||||||||| |||||||||||||| ||||||||||||||||| |||||||||| ||| | |||||||||| |
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| T |
21687100 |
tctttaacaacttcaatttgatagatggaacatctatgtcatgtccacatgttgcaggtgtagcagcgcttttaaaaggggcacacaatggttggagccc |
21687001 |
T |
|
| Q |
171 |
agcagccattagatcggctatgatgacaacatcagacatgttagacaa |
218 |
Q |
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| T |
21687000 |
gtcatctattaggtcggcaattatgacaacatcagacatattagacaa |
21686953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 74 - 209
Target Start/End: Original strand, 8963150 - 8963285
Alignment:
| Q |
74 |
tcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagcccagc |
173 |
Q |
| |
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||||||| ||||| || |||| ||||||||| ||||||||||| || ||||| ||||||| ||||||||| |||| | || || ||||||||| | |
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| T |
8963150 |
tcaacaagttcaattttttaactggaacatctatgtcatgtcctcatgttgccggtgtaggagcacttttgaaaggagcacatgctgattggagcccgac |
8963249 |
T |
|
| Q |
174 |
agccattagatcggctatgatgacaacatcagacat |
209 |
Q |
| |
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| T |
8963250 |
agctattaggtcggcaatgatgacaacatcagacat |
8963285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 209
Target Start/End: Original strand, 8974543 - 8974681
Alignment:
| Q |
71 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcac-ccttg-ttggagc |
168 |
Q |
| |
|
|||||||||| ||||| || |||||||||||||| ||||||| ||| || ||||| ||||||| ||||||||| |||| ||||| ||| ||||||| |
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| T |
8974543 |
tcttcaacaagttcaattttttaagtggaacatctatgtcatctcctcatgttgctggtgtaggagcacttttgaaag--ctgcacatgttgattggagc |
8974640 |
T |
|
| Q |
169 |
ccagcagccattagatcggctatgatgacaacatcagacat |
209 |
Q |
| |
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|| ||||| ||||| || || |||||||||||||||||||| |
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| T |
8974641 |
cctgcagctattaggtcagcaatgatgacaacatcagacat |
8974681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 8945937 - 8945860
Alignment:
| Q |
71 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaag |
148 |
Q |
| |
|
|||||||||| ||||| || |||| ||||||||| | ||||||||| || ||||| ||||||| |||||||||||||| |
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|
| T |
8945937 |
tcttcaacaagttcaaatttttaactggaacatctacgtcatgtcctcatgttgccggtgtaggagcacttttaaaag |
8945860 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 8958133 - 8958210
Alignment:
| Q |
71 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaag |
148 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||| ||| ||||||| || ||||||||||| || |||||||| |||| |
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| T |
8958133 |
tcttcaacaagttcaatgtgataagtggaacatctatggcatgtcctcatgttgcaggtgtcgcggcacttttgaaag |
8958210 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 19375811 - 19375734
Alignment:
| Q |
71 |
tcttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaag |
148 |
Q |
| |
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|||||||||| ||||| ||| ||||||||||||| ||| ||||||| |||||||||||| ||||| |||||| |||| |
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| T |
19375811 |
tcttcaacaagttcaatttgataagtggaacatctatggcatgtcctcacgttgcaggtatagcattacttttgaaag |
19375734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 209
Target Start/End: Complemental strand, 34962715 - 34962579
Alignment:
| Q |
73 |
ttcaacaacttcaacttgttaagtggaacatcaatgtcatgtccacacgttgcaggtgtagcagcacttttaaaagaaatgcacccttgttggagcccag |
172 |
Q |
| |
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|||| ||| ||||| ||| ||||||||||||| ||| | || || || ||||||||||| || || ||||| |||| | |||| | ||||||||||| |
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| T |
34962715 |
ttcagcaaattcaatttgataagtggaacatctatggcgtgccctcatgttgcaggtgtcgcggcgcttttgaaaggagtgcatagtgattggagcccag |
34962616 |
T |
|
| Q |
173 |
cagccattagatcggctatgatgacaacatcagacat |
209 |
Q |
| |
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|||| ||| | ||||| || ||||||||||||||||| |
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| T |
34962615 |
cagcaattcggtcggcaataatgacaacatcagacat |
34962579 |
T |
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