View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2353_low_2 (Length: 262)
Name: NF2353_low_2
Description: NF2353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2353_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 17182620 - 17182372
Alignment:
| Q |
1 |
ttaacttttgagcatatgaaatcttcatttatgcattcaaagtagtgatcatagatttatatatgatatcagatagcaagtcttgaagatttgtggcagg |
100 |
Q |
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| T |
17182620 |
ttaacttttgagcatattaaatcttcatttatgcattcaaagtagtgatcatagatttatgtatgatatcagatagctagtcttgaagatttgtggcagg |
17182521 |
T |
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| Q |
101 |
cttagataagcaacaatgcatgagatggctttcttccaagcaaatttcatgctacaaactcctcatcaccatgatgatcatcatcaaccatcttcactga |
200 |
Q |
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| T |
17182520 |
cttagataagcaacaatgcatgagatggcttttttccaagcaaatttcatgctacaaactcctcatcaccatgatgatcatcatcaaccatcttcactga |
17182421 |
T |
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| Q |
201 |
actcaattctacctcaagattatcatggtatgcatattctctctaacct |
249 |
Q |
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| T |
17182420 |
actcaattctacctcaagattatcatggtatgcatattctctctaacct |
17182372 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 24692990 - 24692942
Alignment:
| Q |
120 |
atgagatggctttcttccaagcaaatttcatgctacaaactcctcatca |
168 |
Q |
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|||| ||||| ||||| | |||||||||||||||||||||| ||||||| |
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| T |
24692990 |
atgatatggcgttctttccagcaaatttcatgctacaaacttctcatca |
24692942 |
T |
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