View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2353_low_3 (Length: 240)

Name: NF2353_low_3

Description: NF2353

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2353_low_3

[»] chr5 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 174; E-Value: 9e-94

Query Start/End: Original strand, 6 - 222

Target Start/End: Complemental strand, 41803653 - 41803432

Alignment:

Q	6	ttcccataaaatttactatctaaaatctttaagaagtgttttaagatattcattacaatttctcgtaatgatataacataagcggttaattgatgaaaat	105	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	41803653	ttcctataaaatttactatctaaaatctttaagaagtattttaagacattcattaacatttctcgtaaagatataacataagcggttaattgataaaaat	41803554	T

Q	106	ttatgatgagactttcaagtcatcaattatgcatttgtcatcacttgtcatatgtgtcatacgaataaaggtttgcatgtcttcaagacaccacac----	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41803553	ttatgatgagactttcaagtcatcaattatgcatttgtcatcacttgtcatatgtgtcatacgaataaaggtttgcatgtcttcaagacaccacaccaca	41803454	T

Q	202	-cacatccacatggtttctttt	222	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41803453	ccacatccacatggtttctttt	41803432	T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 35; E-Value: 0.00000000008

Query Start/End: Original strand, 160 - 202

Target Start/End: Complemental strand, 3383326 - 3383284

Alignment:

Q	160	tgtcatacgaataaaggtttgcatgtcttcaagacaccacacc	202	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3383326	tgtcatatgaataaatgtttgcatgtcttcaagacaccacacc	3383284	T

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