View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2354_high_1 (Length: 453)

Name: NF2354_high_1
Description: NF2354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2354_high_1
NF2354_high_1
[»] chr8 (18 HSPs)
chr8 (17-350)||(17259153-17259507)
chr8 (26-350)||(17334892-17335230)
chr8 (26-341)||(17311641-17311970)
chr8 (350-442)||(17312364-17312457)
chr8 (168-261)||(17311921-17312015)
chr8 (168-261)||(17335181-17335275)
chr8 (354-442)||(17335626-17335715)
chr8 (354-436)||(17259750-17259833)
chr8 (136-198)||(17259150-17259213)
chr8 (25-201)||(17334886-17335047)
chr8 (19-72)||(17312082-17312135)
chr8 (19-72)||(17335342-17335395)
chr8 (25-106)||(17311711-17311787)
chr8 (176-258)||(17312082-17312166)
chr8 (176-258)||(17335342-17335426)
chr8 (175-259)||(17259451-17259536)
chr8 (136-200)||(17311627-17311692)
chr8 (290-342)||(17311812-17311864)
[»] chr7 (1 HSPs)
chr7 (175-225)||(12147962-12148012)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 17259507 - 17259153
Alignment:
Q  17 ataatcgatatatgtgtttatcggttttgcagcgattgtaagtttggaatctggatcatcggttttgctattcatatgagaacgaagaacgtcaaaatcg 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17259507 ataatcgatatatgtgtttatcagttttgcagcgattgtaagtttggaatctggatcatcggttttgctattcatatgagaacgaagaacgtcaaaatcg 17259408  T
Q  117 atcgatctatcactagtttatggatcatcggttattaagaatatttgattaattatttgattattggatatagttcttcataattgaataatatggatat 216  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  17259407 ctcgatctatcgctagtttatggatcatcggttattaagaatatttgattaattatttgattattggatatagttgttcataattgaataacatggatat 17259308  T
Q  217 gtgtttatcggtttgcagcgatcttaagattggaatctggatcgt---------------------aacggagaacacagaaatcgctcgctccatggat 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||                     ||||| ||||||||||||||||||||| ||||||    
T  17259307 gtgtttatcggtttgcagcgatcttaagattggaatctggatcgttttgctagctattcatatgcgaacggcgaacacagaaatcgctcgctcaatggat 17259208  T
Q  296 catcggttatcaagattaatttgattaattatgtgattattggatatagttcttc 350  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17259207 tatcggttatcaagattaatttgattaattatttgattattggatatagttcttc 17259153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 26 - 350
Target Start/End: Complemental strand, 17335230 - 17334892
Alignment:
Q  26 atatgtgtttatcggttttgcagcgattgtaagtttggaatctggatcatcggttttgctattcatatgagaacgaagaacgtcaaaatcgatcgatcta 125  Q
    |||||||||||||  || ||||| |||  ||||||||||||||| |||    ||||||||||||| |||| ||| ||||| | |||||||| || ||| |    
T  17335230 atatgtgtttatccattatgcagtgatcttaagtttggaatctgtatc----gttttgctattcacatgacaacaaagaatgccaaaatcgctctatcca 17335135  T
Q  126 tcactagtttatggatcatcggttattaagaat-atttgattaattatttgattattggatatagttcttcataattgaataatatggatatgtgtttat 224  Q
    ||  |||||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||  || || |||||  ||||||||  ||||||||||||    
T  17335134 tctgtagtttatggataatcggttatcatgaattatttgattaattatttgattattggatatgattatttataatcaaataatatctatatgtgtttat 17335035  T
Q  225 cggtttgcagcgatcttaagattggaatctggatcgt-----------------aacggagaacacagaaatcgctcgctccatggatcatcggttatca 307  Q
    | |||||||||||||||||| ||||||||||||||||                 ||||||||||| |||||||||| |||| ||||||||||||||||||    
T  17335034 ccgtttgcagcgatcttaagtttggaatctggatcgttttgctattcatatgagaacggagaacaaagaaatcgcttgctcaatggatcatcggttatca 17334935  T
Q  308 agattaatttgattaattatgtgattattggatatagttcttc 350  Q
    | | | |||||||| ||||| |||||||||||||||| |||||    
T  17334934 ataattatttgattcattatttgattattggatatagctcttc 17334892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 26 - 341
Target Start/End: Complemental strand, 17311970 - 17311641
Alignment:
Q  26 atatgtgtttatcggttttgcagcgattgtaagtttggaatctggatcatcggttttgctattcatatgagaacgaagaacgtcaaaatcgatcgatcta 125  Q
    |||||||||||||  || ||||| |||  ||||||||||||||| |||    ||||||||||||| |||| ||| ||||| | |||||||| || ||| |    
T  17311970 atatgtgtttatccattatgcagtgatcttaagtttggaatctgtatc----gttttgctattcacatgacaacaaagaatgccaaaatcgctctatcca 17311875  T
Q  126 tcactagtttatggatcatcggttattaagaat-atttgattaattatttgattattggatatagttcttcataattgaataatatggatatgtgtttat 224  Q
    ||  |||||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||  || || |||||  ||||||||  ||||||||||||    
T  17311874 tctgtagtttatggataatcggttatcatgaattatttgattaattatttgattattggatatgattatttataatcaaataatatctatatgtgtttat 17311775  T
Q  225 cggtttgcagcgatcttaagattggaatctggatcgt-----------------aacggagaacacagaaatcgctcgctccatggatcatcggttatca 307  Q
    | |||||||||||||||||| ||||||||||||||||                 ||||||||||| |||||||||| |||| ||||||||||||||||||    
T  17311774 ccgtttgcagcgatcttaagtttggaatctggatcgttttgctattcatatgagaacggagaacaaagaaatcgcttgctcaatggatcatcggttatca 17311675  T
Q  308 agattaatttgattaattatgtgattattggata 341  Q
    | | | |||||||| ||||| |||||||||||||    
T  17311674 ataattatttgattcattatttgattattggata 17311641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 350 - 442
Target Start/End: Complemental strand, 17312457 - 17312364
Alignment:
Q  350 cgcactatataaacctcacaagttcc-tctttccaaagtgcatcgaaacagcgcgttttacgctcctctcgtttgttctatctttctctccttt 442  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  17312457 cgcactatataaacctcacaagttccctctttccaaagtgcatcgaaacagagcgttttacgctcctctcgtttgttctctctttctctccttt 17312364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 17312015 - 17311921
Alignment:
Q  168 attatttgattattggatatagttcttcataattgaataatatggatatgtgtttatcggtt-tgcagcgatcttaagattggaatctggatcgt 261  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||  || ||||| ||||||||| |||||||||| |||||    
T  17312015 attatttgattattggatatagttcgtcataattggataatatcgatatgtgtttatccattatgcagtgatcttaagtttggaatctgtatcgt 17311921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 17335275 - 17335181
Alignment:
Q  168 attatttgattattggatatagttcttcataattgaataatatggatatgtgtttatcggtt-tgcagcgatcttaagattggaatctggatcgt 261  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||  || ||||| ||||||||| |||||||||| |||||    
T  17335275 attatttgattattggatatagttcgtcataattggataatatcgatatgtgtttatccattatgcagtgatcttaagtttggaatctgtatcgt 17335181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 354 - 442
Target Start/End: Complemental strand, 17335715 - 17335626
Alignment:
Q  354 ctatataaacctcacaagttcc-tctttccaaagtgcatcgaaacagcgcgttttacgctcctctcgtttgttctatctttctctccttt 442  Q
    |||||||| ||||| ||||||| |||||||||||||| |||||| ||||| || ||||||||||||||||||||| ||||||||||||||    
T  17335715 ctatataagcctcataagttccgtctttccaaagtgcctcgaaatagcgcattctacgctcctctcgtttgttctctctttctctccttt 17335626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 436
Target Start/End: Complemental strand, 17259833 - 17259750
Alignment:
Q  354 ctatataaacctcacaagttcc-tctttccaaagtgcatcgaaacagcgcgttttacgctcctctcgtttgttctatctttctc 436  Q
    |||||||| ||||| ||||||| |||||||||||||| |||||| |||||||| |||| |||||||||||||||| ||||||||    
T  17259833 ctatataagcctcataagttccctctttccaaagtgcctcgaaatagcgcgttctacgttcctctcgtttgttctctctttctc 17259750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 17259213 - 17259150
Alignment:
Q  136 atggatcatcggttattaagaata-tttgattaattatttgattattggatatagttcttcata 198  Q
    |||||| ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  17259213 atggattatcggttatcaagattaatttgattaattatttgattattggatatagttcttcata 17259150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 17335047 - 17334886
Alignment:
Q  25 tatatgtgtttatcggttttgcagcgattgtaagtttggaatctggatcatcggttttgctattcatatgagaacgaagaacgtcaaaatcgatcgatct 124  Q
    |||||||||||||| |||| ||||||||  |||||||||||||||||||    ||||||||||||||||||||||| |||||    |||||| | | ||     
T  17335047 tatatgtgtttatccgttt-gcagcgatcttaagtttggaatctggatc----gttttgctattcatatgagaacggagaacaaagaaatcgcttgctc- 17334954  T
Q  125 atcactagtttatggatcatcggttattaagaa-tatttgattaattatttgattattggatatagttcttcataatt 201  Q
               |||||||||||||||| || || ||||||||| |||||||||||||||||||||| |||||||||||    
T  17334953 ----------aatggatcatcggttatcaataattatttgattcattatttgattattggatatagctcttcataatt 17334886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 17312135 - 17312082
Alignment:
Q  19 aatcgatatatgtgtttatcggttttgcagcgattgtaagtttggaatctggat 72  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||    
T  17312135 aatcgatacatgtgtttatcggttttgcagcgatcgtacgtttggaatctggat 17312082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 17335395 - 17335342
Alignment:
Q  19 aatcgatatatgtgtttatcggttttgcagcgattgtaagtttggaatctggat 72  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||    
T  17335395 aatcgatacatgtgtttatcggttttgcagcgatcgtacgtttggaatctggat 17335342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 17311787 - 17311711
Alignment:
Q  25 tatatgtgtttatcggttttgcagcgattgtaagtttggaatctggatcatcggttttgctattcatatgagaacgaagaac 106  Q
    |||||||||||||| |||| ||||||||  |||||||||||||||||||    ||||||||||||||||||||||| |||||    
T  17311787 tatatgtgtttatccgttt-gcagcgatcttaagtttggaatctggatc----gttttgctattcatatgagaacggagaac 17311711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 17312166 - 17312082
Alignment:
Q  176 attattggatatagttcttcataattgaataatatggat--atgtgtttatcgg-tttgcagcgatcttaagattggaatctggat 258  Q
    |||||||||| ||||||||||||||||||||| || |||  ||||||||||||| |||||||||||| || | |||||||||||||    
T  17312166 attattggatgtagttcttcataattgaataa-atcgatacatgtgtttatcggttttgcagcgatcgtacgtttggaatctggat 17312082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 17335426 - 17335342
Alignment:
Q  176 attattggatatagttcttcataattgaataatatggat--atgtgtttatcgg-tttgcagcgatcttaagattggaatctggat 258  Q
    |||||||||| ||||||||||||||||||||| || |||  ||||||||||||| |||||||||||| || | |||||||||||||    
T  17335426 attattggatgtagttcttcataattgaataa-atcgatacatgtgtttatcggttttgcagcgatcgtacgtttggaatctggat 17335342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 17259536 - 17259451
Alignment:
Q  175 gattattggatatagttcttcataattgaataatatggatatgtgtttatc-ggtttgcagcgatcttaagattggaatctggatc 259  Q
    |||||||||||||  |||||||||||||||||||    ||||||||||||| | |||||||||||  |||| ||||||||||||||    
T  17259536 gattattggatatgattcttcataattgaataatcgatatatgtgtttatcagttttgcagcgattgtaagtttggaatctggatc 17259451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 17311692 - 17311627
Alignment:
Q  136 atggatcatcggttattaagaat-atttgattaattatttgattattggatatagttcttcataat 200  Q
    |||||||||||||||| || ||| |||||||| ||||||||||||||||||| || ||| ||||||    
T  17311692 atggatcatcggttatcaataattatttgattcattatttgattattggatacagctctccataat 17311627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 17311864 - 17311812
Alignment:
Q  290 atggatcatcggttatcaagattaatttgattaattatgtgattattggatat 342  Q
    |||||| ||||||||||| || | |||||||||||||| ||||||||||||||    
T  17311864 atggataatcggttatcatgaattatttgattaattatttgattattggatat 17311812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 12148012 - 12147962
Alignment:
Q  175 gattattggatatagttcttcataattgaataatatggatatgtgtttatc 225  Q
    |||||||||||||||||||||||||||| |||||   |||||| |||||||    
T  12148012 gattattggatatagttcttcataattggataattgagatatgcgtttatc 12147962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University