View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2354_high_2 (Length: 343)
Name: NF2354_high_2
Description: NF2354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2354_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 10054583 - 10054271
Alignment:
| Q |
18 |
aatcatctcattaaagtgctctttggtgagttgatagnnnnnnngacaaatagaaagaggcatatacataagggcatgccgctaaaagaaagaaaaggtt |
117 |
Q |
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| T |
10054583 |
aatcatctcattaaagtgctctttggtgagttggtagtttttttgacaaatagaaaggggcatatacataagggcatgccgctaaaagaaagaaaaggtt |
10054484 |
T |
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| Q |
118 |
tgcggaataaccacagctgcaattgcgaccacatttttaaagcatggtatgcacattctaatatataatagcaagacttccatccctggttgacaagaat |
217 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10054483 |
tgcggaataaccacagctgcaattgtgaccacatttttaaagcatggtatgcacattctaatatataatagcaagacttccatccctggttgacaagaaa |
10054384 |
T |
|
| Q |
218 |
tgcaaaattgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtcatatttttcagaagcgatgtttgctgcatagcaaggttc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10054383 |
tgcaaaattgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtcatatttttcaaaagcgatgtttgctgcatagcaaggttc |
10054284 |
T |
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| Q |
318 |
ttccattcatctc |
330 |
Q |
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|||||||| |||| |
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| T |
10054283 |
ttccattcttctc |
10054271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 10032671 - 10032359
Alignment:
| Q |
18 |
aatcatctcattaaagtgctctttggtgagttgatagnnnnnnngacaaatagaaagaggcatatacataagggcatgccgctaaaagaaagaaaaggtt |
117 |
Q |
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| T |
10032671 |
aatcatctcattaaagtgctctttggtgagttggtagtttttttgacaaatagaaagaggcatatacataagggcatgccgctaaaagaaagaaaaggtt |
10032572 |
T |
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| Q |
118 |
tgcggaataaccacagctgcaattgcgaccacatttttaaagcatggtatgcacattctaatatataatagcaagacttccatccctggttgacaagaat |
217 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10032571 |
tgcggaataaccacagctgcaaatgcgaccacatttttaaagcatggtatgcacattctaatatataatagcaagacttccatccgtggttgacaagaaa |
10032472 |
T |
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| Q |
218 |
tgcaaaattgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtcatatttttcagaagcgatgtttgctgcatagcaaggttc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10032471 |
tgcaaaattgaaatggtgttaatagcaacaagaagacactcacgtgagatagggaagagtcatatttttcaaaagcgatgtttgctgcatagcaaggttc |
10032372 |
T |
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| Q |
318 |
ttccattcatctc |
330 |
Q |
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|||||||| |||| |
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| T |
10032371 |
ttccattcttctc |
10032359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 179 - 325
Target Start/End: Complemental strand, 10064511 - 10064365
Alignment:
| Q |
179 |
tatataatagcaagacttccatccctggttgacaagaattgcaaaattgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtc |
278 |
Q |
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|||||| | ||||| ||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10064511 |
tatatacttgcaaggctttcatccctgattgaccagaatagcaaaattgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtc |
10064412 |
T |
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| Q |
279 |
atatttttcagaagcgatgtttgctgcatagcaaggttcttccattc |
325 |
Q |
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| T |
10064411 |
atatttgtcagaagggatggctgctgcatggcaaggttcttccattc |
10064365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 297
Target Start/End: Complemental strand, 10075195 - 10075110
Alignment:
| Q |
213 |
agaattgcaaaa-ttgaaatggtgttaatagcaacaagaagaaactcacgtgagatagggaagagtcatatttttcagaagcgatg |
297 |
Q |
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|||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||| |||| |
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| T |
10075195 |
agaattgcaaaaattgaaatggcgttaatagcgacaagaagaaactcacgtcagatacagaagagacatatttttcagaagagatg |
10075110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 56203177 - 56203129
Alignment:
| Q |
249 |
gaagaaactcacgtgagatagggaagagtcatatttttcagaagcgatg |
297 |
Q |
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|||||||||||| | ||||| |||||||||||||||||||||| |||| |
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| T |
56203177 |
gaagaaactcacttcagatactgaagagtcatatttttcagaagggatg |
56203129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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