View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2354_low_1 (Length: 498)
Name: NF2354_low_1
Description: NF2354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2354_low_1 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 21 - 485
Target Start/End: Complemental strand, 34687961 - 34687497
Alignment:
| Q |
21 |
tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaatta |
120 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687961 |
tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaatta |
34687862 |
T |
|
| Q |
121 |
attcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacacaatcaat |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34687861 |
attcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacacaatcaat |
34687762 |
T |
|
| Q |
221 |
catataagaaagaaatttcttaatctcaaatcaacaatgatatacaatttaaaggactccatgaagtaactaaattgttacccattagaaacgtccaaaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687761 |
catataagaaagaaatttcttaatctcaaatcaacaatgatatacaatttaaaggactccatgaagtaactaaattgttacccattagaaacgtccaaaa |
34687662 |
T |
|
| Q |
321 |
tcttatcaatcgaaacattcgcagaagtaaaaatcaatataaatttaaaggactgcatatgttacagaaacactatgaatgaatactcttaaatatgaaa |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34687661 |
tcttatcaatcgaaacattcgcagaagtaaaaatcaatataaatttaaaggactgcatatgttacagaaacactatgaatgaatactcttaaatatgaaa |
34687562 |
T |
|
| Q |
421 |
tttgttaattcttcgcataatacctttactcgtagaggatcaccaaattccaaagattgcttttc |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34687561 |
tttgttaattcttcgcataatacctttactcgtagaggatcaccaaattccaaagattgcttttc |
34687497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 418; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 21 - 485
Target Start/End: Complemental strand, 26985902 - 26985448
Alignment:
| Q |
21 |
tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaatta |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26985902 |
tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaatta |
26985803 |
T |
|
| Q |
121 |
attcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacacaatcaat |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
26985802 |
attcatgggataaactatcagatgaaattcaatattaattcaaagtagtttcaatgaatatgaggaatttcaatgagaagaggaat----------caat |
26985713 |
T |
|
| Q |
221 |
catataagaaagaaatttcttaatctcaaatcaacaatgatatacaatttaaaggactccatgaagtaactaaattgttacccattagaaacgtccaaaa |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
26985712 |
catataagaaagaaatttcttaatctcaaatcaacaatgatatacaatttaaaggactccatgaagtaactaaattgttacccattagaacggtccaaaa |
26985613 |
T |
|
| Q |
321 |
tcttatcaatcgaaacattcgcagaagtaaaaatcaatataaatttaaaggactgcatatgttacagaaacactatgaatgaatactcttaaatatgaaa |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26985612 |
tcttatcaatcgaaacattcgcagaagtaaaaatcaatataaatttaaaggactgcatatgttacagaaacactatgaatgaatactcttaaatatgaaa |
26985513 |
T |
|
| Q |
421 |
tttgttaattcttcgcataatacctttactcgtagaggatcaccaaattccaaagattgcttttc |
485 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26985512 |
tttgttaattcttcgcataatacctttactcgtagaggatcaccaaattccaaagattgcttttc |
26985448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 23 - 178
Target Start/End: Original strand, 27079470 - 27079625
Alignment:
| Q |
23 |
taagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaattaat |
122 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
27079470 |
taagtcccaaatcaaatgaaattactgggtgaagtacctaagttgttagattctttggaattaatcgtagttggcaaacatacatccaactttaattaat |
27079569 |
T |
|
| Q |
123 |
tcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaa |
178 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27079570 |
tcatgggataaactatcaaatgaaattcaatattaattcaaagtactttcaatgaa |
27079625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 18 - 157
Target Start/End: Complemental strand, 27025740 - 27025601
Alignment:
| Q |
18 |
atgtttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaattcatcgtagttggaaaacatacatctaactttaa |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||| | |||||||| |
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|
| T |
27025740 |
atgtgtaagtcccaaatcagatgaaattactcggtgaagcacctaagttgttagattcgttggaattaatcgtagttggctaacatacagccaactttaa |
27025641 |
T |
|
| Q |
118 |
ttaattcatgggataaactatcagatgaaattcaatatta |
157 |
Q |
| |
|
|||||||||||| |||||| ||| |||||||||||||||| |
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|
| T |
27025640 |
ttaattcatgggctaaactgtcaaatgaaattcaatatta |
27025601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 349 - 482
Target Start/End: Original strand, 27079863 - 27079991
Alignment:
| Q |
349 |
aaaaatcaatataaatttaaaggactgcatatgttacagaaacactatgaatgaatactcttaaatatgaaatttgttaattcttcgcataataccttta |
448 |
Q |
| |
|
|||||||||||||||||||||| |||| || || || ||||||| ||||| | | |||||||||||| ||||||||||||||||| | ||||||||| |
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|
| T |
27079863 |
aaaaatcaatataaatttaaagcactgtatgtgctatagaaacagtatgactatagactcttaaatataaaatttgttaattcttccc---ataccttta |
27079959 |
T |
|
| Q |
449 |
ctcgtagaggatcaccaaattccaaagattgctt |
482 |
Q |
| |
|
||| || ||||||| |||||||||||||||||| |
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|
| T |
27079960 |
ctc--agtggatcacgaaattccaaagattgctt |
27079991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 428 - 483
Target Start/End: Complemental strand, 27025421 - 27025366
Alignment:
| Q |
428 |
attcttcgcataatacctttactcgtagaggatcaccaaattccaaagattgcttt |
483 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27025421 |
attcttcgcataatacctttactcttagaggatcaccaaattccaaagattgcttt |
27025366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 270
Target Start/End: Complemental strand, 27025518 - 27025488
Alignment:
| Q |
240 |
ttaatctcaaatcaacaatgatatacaattt |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
27025518 |
ttaatctcaaatcaacaatgatatacaattt |
27025488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 27079689 - 27079725
Alignment:
| Q |
234 |
aatttcttaatctcaaatcaacaatgatatacaattt |
270 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
27079689 |
aatttcttaatctcaaatcattaatgatatacaattt |
27079725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 281 - 485
Target Start/End: Complemental strand, 30228088 - 30227885
Alignment:
| Q |
281 |
atgaagtaactaaattgttacccattagaaacgtccaaaatcttatcaatcgaaacattcgcagaagtaaaaatcaatataaatttaaaggactgcatat |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
30228088 |
atgaagtaactaaattgttacccattagaacggtccaaaatcttaccaatcgaaaatttcgca-aagtaaaaatcaatataaatttaaaggactgcatat |
30227990 |
T |
|
| Q |
381 |
gttacagaaacactatgaatgaatactcttaaatatgaaatttgttaattcttcgcataatacctttactcgtagaggatcaccaaattccaaagattgc |
480 |
Q |
| |
|
|||| ||||||||||||| | | |||||| |||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
30227989 |
gttagagaaacactatgactataaactcttgaatacgaaatttgttgattcttcgcataatacctttactcttagaggatcaccaaattccaaagattgc |
30227890 |
T |
|
| Q |
481 |
ttttc |
485 |
Q |
| |
|
||||| |
|
|
| T |
30227889 |
ttttc |
30227885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 116 - 270
Target Start/End: Complemental strand, 30228291 - 30228123
Alignment:
| Q |
116 |
aattaattcatgggataaactatcagatgaaattcaatattaattcaaagtactttcaatgaatatgaggaatttcaatgagaagaggaattttacaca- |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| |
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|
| T |
30228291 |
aattaattcatgggataaactatcagatgaaattcagtattaattcaaagtactttcaatcaagatgaggaatttcaatgaggagaggaattttacacat |
30228192 |
T |
|
| Q |
215 |
-------------atcaatcatataagaaagaaatttcttaatctcaaatcaacaatgatatacaattt |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30228191 |
atacccaaaatcgatcaatcatataagaaagaaatttcttaatctcaaaccaacaatgatatacaattt |
30228123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 30228365 - 30228304
Alignment:
| Q |
21 |
tttaagtcccaaatcagatgaaattactcagtgaagcacctaagttgttagattctttggaa |
82 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
30228365 |
tttaaatcccaaatcagatgaaattactcggtgaagcacctgagttgttagattctttggaa |
30228304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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