View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2354_low_2 (Length: 453)

Name: NF2354_low_2
Description: NF2354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2354_low_2
NF2354_low_2
[»] chr8 (18 HSPs)
chr8 (17-350)||(17259153-17259507)
chr8 (26-350)||(17334892-17335230)
chr8 (26-341)||(17311641-17311970)
chr8 (350-442)||(17312364-17312457)
chr8 (168-261)||(17311921-17312015)
chr8 (168-261)||(17335181-17335275)
chr8 (354-442)||(17335626-17335715)
chr8 (354-436)||(17259750-17259833)
chr8 (136-198)||(17259150-17259213)
chr8 (25-201)||(17334886-17335047)
chr8 (19-72)||(17312082-17312135)
chr8 (19-72)||(17335342-17335395)
chr8 (25-106)||(17311711-17311787)
chr8 (176-258)||(17312082-17312166)
chr8 (176-258)||(17335342-17335426)
chr8 (175-259)||(17259451-17259536)
chr8 (136-200)||(17311627-17311692)
chr8 (290-342)||(17311812-17311864)
[»] chr7 (1 HSPs)
chr7 (175-225)||(12147962-12148012)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 17259507 - 17259153
Alignment:
Q  17 ataatcgatatatgtgtttatcggttttgcagcgattgtaagtttggaatctggatcatcggttttgctattcatatgagaacgaagaacgtcaaaatcg 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17259507 ataatcgatatatgtgtttatcagttttgcagcgattgtaagtttggaatctggatcatcggttttgctattcatatgagaacgaagaacgtcaaaatcg 17259408  T
Q  117 atcgatctatcactagtttatggatcatcggttattaagaatatttgattaattatttgattattggatatagttcttcataattgaataatatggatat 216  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  17259407 ctcgatctatcgctagtttatggatcatcggttattaagaatatttgattaattatttgattattggatatagttgttcataattgaataacatggatat 17259308  T
Q  217 gtgtttatcggtttgcagcgatcttaagattggaatctggatcgt---------------------aacggagaacacagaaatcgctcgctccatggat 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||                     ||||| ||||||||||||||||||||| ||||||    
T  17259307 gtgtttatcggtttgcagcgatcttaagattggaatctggatcgttttgctagctattcatatgcgaacggcgaacacagaaatcgctcgctcaatggat 17259208  T
Q  296 catcggttatcaagattaatttgattaattatgtgattattggatatagttcttc 350  Q
     ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17259207 tatcggttatcaagattaatttgattaattatttgattattggatatagttcttc 17259153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 26 - 350
Target Start/End: Complemental strand, 17335230 - 17334892
Alignment:
Q  26 atatgtgtttatcggttttgcagcgattgtaagtttggaatctggatcatcggttttgctattcatatgagaacgaagaacgtcaaaatcgatcgatcta 125  Q
    |||||||||||||  || ||||| |||  ||||||||||||||| |||    ||||||||||||| |||| ||| ||||| | |||||||| || ||| |    
T  17335230 atatgtgtttatccattatgcagtgatcttaagtttggaatctgtatc----gttttgctattcacatgacaacaaagaatgccaaaatcgctctatcca 17335135  T
Q  126 tcactagtttatggatcatcggttattaagaat-atttgattaattatttgattattggatatagttcttcataattgaataatatggatatgtgtttat 224  Q
    ||  |||||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||  || || |||||  ||||||||  ||||||||||||    
T  17335134 tctgtagtttatggataatcggttatcatgaattatttgattaattatttgattattggatatgattatttataatcaaataatatctatatgtgtttat 17335035  T
Q  225 cggtttgcagcgatcttaagattggaatctggatcgt-----------------aacggagaacacagaaatcgctcgctccatggatcatcggttatca 307  Q
    | |||||||||||||||||| ||||||||||||||||                 ||||||||||| |||||||||| |||| ||||||||||||||||||    
T  17335034 ccgtttgcagcgatcttaagtttggaatctggatcgttttgctattcatatgagaacggagaacaaagaaatcgcttgctcaatggatcatcggttatca 17334935  T
Q  308 agattaatttgattaattatgtgattattggatatagttcttc 350  Q
    | | | |||||||| ||||| |||||||||||||||| |||||    
T  17334934 ataattatttgattcattatttgattattggatatagctcttc 17334892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 26 - 341
Target Start/End: Complemental strand, 17311970 - 17311641
Alignment:
Q  26 atatgtgtttatcggttttgcagcgattgtaagtttggaatctggatcatcggttttgctattcatatgagaacgaagaacgtcaaaatcgatcgatcta 125  Q
    |||||||||||||  || ||||| |||  ||||||||||||||| |||    ||||||||||||| |||| ||| ||||| | |||||||| || ||| |    
T  17311970 atatgtgtttatccattatgcagtgatcttaagtttggaatctgtatc----gttttgctattcacatgacaacaaagaatgccaaaatcgctctatcca 17311875  T
Q  126 tcactagtttatggatcatcggttattaagaat-atttgattaattatttgattattggatatagttcttcataattgaataatatggatatgtgtttat 224  Q
    ||  |||||||||||| ||||||||| | |||| |||||||||||||||||||||||||||||  || || |||||  ||||||||  ||||||||||||    
T  17311874 tctgtagtttatggataatcggttatcatgaattatttgattaattatttgattattggatatgattatttataatcaaataatatctatatgtgtttat 17311775  T
Q  225 cggtttgcagcgatcttaagattggaatctggatcgt-----------------aacggagaacacagaaatcgctcgctccatggatcatcggttatca 307  Q
    | |||||||||||||||||| ||||||||||||||||                 ||||||||||| |||||||||| |||| ||||||||||||||||||    
T  17311774 ccgtttgcagcgatcttaagtttggaatctggatcgttttgctattcatatgagaacggagaacaaagaaatcgcttgctcaatggatcatcggttatca 17311675  T
Q  308 agattaatttgattaattatgtgattattggata 341  Q
    | | | |||||||| ||||| |||||||||||||    
T  17311674 ataattatttgattcattatttgattattggata 17311641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 350 - 442
Target Start/End: Complemental strand, 17312457 - 17312364
Alignment:
Q  350 cgcactatataaacctcacaagttcc-tctttccaaagtgcatcgaaacagcgcgttttacgctcctctcgtttgttctatctttctctccttt 442  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  17312457 cgcactatataaacctcacaagttccctctttccaaagtgcatcgaaacagagcgttttacgctcctctcgtttgttctctctttctctccttt 17312364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 17312015 - 17311921
Alignment:
Q  168 attatttgattattggatatagttcttcataattgaataatatggatatgtgtttatcggtt-tgcagcgatcttaagattggaatctggatcgt 261  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||  || ||||| ||||||||| |||||||||| |||||    
T  17312015 attatttgattattggatatagttcgtcataattggataatatcgatatgtgtttatccattatgcagtgatcttaagtttggaatctgtatcgt 17311921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 168 - 261
Target Start/End: Complemental strand, 17335275 - 17335181
Alignment:
Q  168 attatttgattattggatatagttcttcataattgaataatatggatatgtgtttatcggtt-tgcagcgatcttaagattggaatctggatcgt 261  Q
    ||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||  || ||||| ||||||||| |||||||||| |||||    
T  17335275 attatttgattattggatatagttcgtcataattggataatatcgatatgtgtttatccattatgcagtgatcttaagtttggaatctgtatcgt 17335181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 354 - 442
Target Start/End: Complemental strand, 17335715 - 17335626
Alignment:
Q  354 ctatataaacctcacaagttcc-tctttccaaagtgcatcgaaacagcgcgttttacgctcctctcgtttgttctatctttctctccttt 442  Q
    |||||||| ||||| ||||||| |||||||||||||| |||||| ||||| || ||||||||||||||||||||| ||||||||||||||    
T  17335715 ctatataagcctcataagttccgtctttccaaagtgcctcgaaatagcgcattctacgctcctctcgtttgttctctctttctctccttt 17335626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 436
Target Start/End: Complemental strand, 17259833 - 17259750
Alignment:
Q  354 ctatataaacctcacaagttcc-tctttccaaagtgcatcgaaacagcgcgttttacgctcctctcgtttgttctatctttctc 436  Q
    |||||||| ||||| ||||||| |||||||||||||| |||||| |||||||| |||| |||||||||||||||| ||||||||    
T  17259833 ctatataagcctcataagttccctctttccaaagtgcctcgaaatagcgcgttctacgttcctctcgtttgttctctctttctc 17259750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 17259213 - 17259150
Alignment:
Q  136 atggatcatcggttattaagaata-tttgattaattatttgattattggatatagttcttcata 198  Q
    |||||| ||||||||| |||| || |||||||||||||||||||||||||||||||||||||||    
T  17259213 atggattatcggttatcaagattaatttgattaattatttgattattggatatagttcttcata 17259150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 201
Target Start/End: Complemental strand, 17335047 - 17334886
Alignment:
Q  25 tatatgtgtttatcggttttgcagcgattgtaagtttggaatctggatcatcggttttgctattcatatgagaacgaagaacgtcaaaatcgatcgatct 124  Q
    |||||||||||||| |||| ||||||||  |||||||||||||||||||    ||||||||||||||||||||||| |||||    |||||| | | ||     
T  17335047 tatatgtgtttatccgttt-gcagcgatcttaagtttggaatctggatc----gttttgctattcatatgagaacggagaacaaagaaatcgcttgctc- 17334954  T
Q  125 atcactagtttatggatcatcggttattaagaa-tatttgattaattatttgattattggatatagttcttcataatt 201  Q
               |||||||||||||||| || || ||||||||| |||||||||||||||||||||| |||||||||||    
T  17334953 ----------aatggatcatcggttatcaataattatttgattcattatttgattattggatatagctcttcataatt 17334886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 17312135 - 17312082
Alignment:
Q  19 aatcgatatatgtgtttatcggttttgcagcgattgtaagtttggaatctggat 72  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||    
T  17312135 aatcgatacatgtgtttatcggttttgcagcgatcgtacgtttggaatctggat 17312082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 17335395 - 17335342
Alignment:
Q  19 aatcgatatatgtgtttatcggttttgcagcgattgtaagtttggaatctggat 72  Q
    |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||    
T  17335395 aatcgatacatgtgtttatcggttttgcagcgatcgtacgtttggaatctggat 17335342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 106
Target Start/End: Complemental strand, 17311787 - 17311711
Alignment:
Q  25 tatatgtgtttatcggttttgcagcgattgtaagtttggaatctggatcatcggttttgctattcatatgagaacgaagaac 106  Q
    |||||||||||||| |||| ||||||||  |||||||||||||||||||    ||||||||||||||||||||||| |||||    
T  17311787 tatatgtgtttatccgttt-gcagcgatcttaagtttggaatctggatc----gttttgctattcatatgagaacggagaac 17311711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 17312166 - 17312082
Alignment:
Q  176 attattggatatagttcttcataattgaataatatggat--atgtgtttatcgg-tttgcagcgatcttaagattggaatctggat 258  Q
    |||||||||| ||||||||||||||||||||| || |||  ||||||||||||| |||||||||||| || | |||||||||||||    
T  17312166 attattggatgtagttcttcataattgaataa-atcgatacatgtgtttatcggttttgcagcgatcgtacgtttggaatctggat 17312082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 17335426 - 17335342
Alignment:
Q  176 attattggatatagttcttcataattgaataatatggat--atgtgtttatcgg-tttgcagcgatcttaagattggaatctggat 258  Q
    |||||||||| ||||||||||||||||||||| || |||  ||||||||||||| |||||||||||| || | |||||||||||||    
T  17335426 attattggatgtagttcttcataattgaataa-atcgatacatgtgtttatcggttttgcagcgatcgtacgtttggaatctggat 17335342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 17259536 - 17259451
Alignment:
Q  175 gattattggatatagttcttcataattgaataatatggatatgtgtttatc-ggtttgcagcgatcttaagattggaatctggatc 259  Q
    |||||||||||||  |||||||||||||||||||    ||||||||||||| | |||||||||||  |||| ||||||||||||||    
T  17259536 gattattggatatgattcttcataattgaataatcgatatatgtgtttatcagttttgcagcgattgtaagtttggaatctggatc 17259451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 17311692 - 17311627
Alignment:
Q  136 atggatcatcggttattaagaat-atttgattaattatttgattattggatatagttcttcataat 200  Q
    |||||||||||||||| || ||| |||||||| ||||||||||||||||||| || ||| ||||||    
T  17311692 atggatcatcggttatcaataattatttgattcattatttgattattggatacagctctccataat 17311627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 17311864 - 17311812
Alignment:
Q  290 atggatcatcggttatcaagattaatttgattaattatgtgattattggatat 342  Q
    |||||| ||||||||||| || | |||||||||||||| ||||||||||||||    
T  17311864 atggataatcggttatcatgaattatttgattaattatttgattattggatat 17311812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 12148012 - 12147962
Alignment:
Q  175 gattattggatatagttcttcataattgaataatatggatatgtgtttatc 225  Q
    |||||||||||||||||||||||||||| |||||   |||||| |||||||    
T  12148012 gattattggatatagttcttcataattggataattgagatatgcgtttatc 12147962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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