View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2354_low_5 (Length: 322)
Name: NF2354_low_5
Description: NF2354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2354_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 40797131 - 40796815
Alignment:
| Q |
1 |
taatttttgacaaattattgcacgtgataattaaatctcataggaaaattaattctcagtacgtatggtggtatcaatgtgacattaacgaaaaatatca |
100 |
Q |
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| T |
40797131 |
taatttttgacaaattatttcacgtgatacttaaatttcataggaaaattaatccttagtacctatagtggtatcgacgtgacattaacgaaaaatatca |
40797032 |
T |
|
| Q |
101 |
tatatttatttaatgtgtcacatcacggtttataatgataaaaatttacagaaaaatcacatac----atactataatttataaaaatcaatgactattt |
196 |
Q |
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| T |
40797031 |
tatatttatttaatgtgtcacatcacggtttataatgataaaaatttacagaaaaattacatacatagatactgtaatttatagaaatcaatgacta-tt |
40796933 |
T |
|
| Q |
197 |
ttgaccgatgtttatattttagagaagtaattcgcttgctctactccaacttaaccctttttccttctttgatatatttttaaaaattactaaatactcg |
296 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40796932 |
ttgaccgatgtttatattttggagaagtaattcgcttgctctactccaacttaaccctttttccttctttgatatattttttaaaattactaaatactcg |
40796833 |
T |
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| Q |
297 |
ttaaaatgttagaataat |
314 |
Q |
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|||||||||||||||||| |
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| T |
40796832 |
ttaaaatgttagaataat |
40796815 |
T |
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