View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2356_high_13 (Length: 364)
Name: NF2356_high_13
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_high_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 28675509 - 28675834
Alignment:
| Q |
20 |
tttgaagcagaagggtcattactttgatgtaattaattgtgtcgcgtattcgcagga--ctcaactccttgctattggagcaaatgataataaagtgaaa |
117 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
28675509 |
tttgaagcagcagggtcattactttgatgt---taattgtgtcgcatattcgcaggattctcaactccttgctactggagcagatgataataaagtgaag |
28675605 |
T |
|
| Q |
118 |
gtattcactctcacattgtactttatgctaattaatatttggtttgaaattcttagataaaatgaattgtgcaaacactgaattgatcatgatgatataa |
217 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28675606 |
gtattcactctcacattgtactttttgctaattaatatttggtttgaatttctaagataaaatgaactgtgcaaacactgaattgatcatgatgatataa |
28675705 |
T |
|
| Q |
218 |
tgtcac-----catgttaattgtgtaataatcaaatatttgtatatgtgtatagtgaaaagtgaaacatagataaaatattggacctagtatgagtaagg |
312 |
Q |
| |
|
|||||| |||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
28675706 |
tgtcaccagaacatgtttattgtgtaatagtcaaatatttgtacatgtgtatagtgaaaagtgaaacatagataaaatgttggacctagtataagtaagg |
28675805 |
T |
|
| Q |
313 |
taac---actgtcaaaaagagccaaggag |
338 |
Q |
| |
|
|||| |||||||||||||||| ||||| |
|
|
| T |
28675806 |
taacagaactgtcaaaaagagccgaggag |
28675834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University