View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2356_high_16 (Length: 334)
Name: NF2356_high_16
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 12868255 - 12868431
Alignment:
| Q |
19 |
agtctcattgttttatgttttatttctcattccgaactatatggattgaagttgttt-gaacaagatttatttactttttgatgaaattttttaacaagg |
117 |
Q |
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| T |
12868255 |
agtctcattgttttatgttttatttctcattccgaactatatggattgaagttgttttgaacaagatttatttactttttgatgaaattttttaacaaga |
12868354 |
T |
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| Q |
118 |
ttttatatatatgcaattattaataatctatcacaatcaacctaactacgatccaagaattccttgatttatttata |
194 |
Q |
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| T |
12868355 |
ttttatatatatgcaattattaataagctatcacaatcaacctaactacgatccaagaattacttgatttatttata |
12868431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 186 - 329
Target Start/End: Original strand, 12869746 - 12869889
Alignment:
| Q |
186 |
ttatttataagctataacaatccatatatctatagttaccatttgacttttactttacgtaggcttgacctagatgtgcactacaaagatgtaaaaaata |
285 |
Q |
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| T |
12869746 |
ttatttataagctataaccatccatatatctatagttaccatttgacttttactttacgtagggttgacctagatgtgcactgcaaagatgtaaaaaata |
12869845 |
T |
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| Q |
286 |
gattgggggaggaaactgcttctgatttcttctcctttgctact |
329 |
Q |
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| T |
12869846 |
gattgggggaggaaactgcttctgatttcttcttctttgttact |
12869889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 12965027 - 12964971
Alignment:
| Q |
19 |
agtctcattgttttatgttttatttctcattccgaactatatggattgaagttgttt |
75 |
Q |
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| T |
12965027 |
agtctcattgttttatgttttatttcttattccaaactacatggattgaaattgttt |
12964971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 15136664 - 15136718
Alignment:
| Q |
21 |
tctcattgttttatgttttatttctcattccgaactatatggattgaagttgttt |
75 |
Q |
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| T |
15136664 |
tctcattgttttatgttttatttttcattccaaacaacatgaattgaagttgttt |
15136718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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