View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2356_high_19 (Length: 309)
Name: NF2356_high_19
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 31184070 - 31183776
Alignment:
| Q |
1 |
gttttcttcgacaaaaaatataaattgaaattccaacaccacacaacactaatactagagctcctaaagcaatgaataccgatcgaatgacattttttct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31184070 |
gttttcttcgacaaaaaatataaattgaaattccaacaccacacaacactaatattagagctcctaaagcaatgaataccgatcgaatgacattttttct |
31183971 |
T |
|
| Q |
101 |
ctttcgactattgtttgttggacaaggaaccaaacctgtgatatttccgcataagcctttgttattttttaatgattcaaacggagcaagaagaaaagct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31183970 |
ctttcgactattgtttgttggacaaggaaccaaacctgtgatatttccgcataagcctttgttattttttaatgattcaaacggagcaagaagaaaagct |
31183871 |
T |
|
| Q |
201 |
ggaattttaggaagtgggccttctaactggttgtctgatatattaacaaaaaccaaattcctttcaaaattttgaggaatggttcctgaaagcat |
295 |
Q |
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| T |
31183870 |
ggaattttaggaagtgggccttctaactggttgtctgatatattaacaaaaaccaaattcctttcaaaattttgaggaatggttcctgaaagcat |
31183776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 40 - 295
Target Start/End: Complemental strand, 31058507 - 31058252
Alignment:
| Q |
40 |
cacacaacactaatactagagctcctaaagcaatgaataccgatcgaatgacattttttctctttcgactattgtttgttggacaaggaaccaaacctgt |
139 |
Q |
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||||||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| | |||| | ||||||| |||||||| | |
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| T |
31058507 |
cacacaacactaatattacagctcctaaagcaatgaataccggtcgaaggacattttttctctttcgactatggcttgtagcacaaggatccaaacctct |
31058408 |
T |
|
| Q |
140 |
gatatttccgcataagcctttgttattttttaatgattcaaacggagcaagaagaaaagctggaattttaggaagtgggccttctaactggttgtctgat |
239 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| | |||| ||||||||| |||||||| || ||||| ||||||||||||||||||||| |
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| T |
31058407 |
gatatttccgcataagtgattgttattttttaatgattcaaatgaagcactaagaaaagccggaatttttggtagtggaccttctaactggttgtctgat |
31058308 |
T |
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| Q |
240 |
atattaacaaaaaccaaattcctttcaaaattttgaggaatggttcctgaaagcat |
295 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31058307 |
atattaacaaaaaccaaattccttccaaaattttgaggaatggttcctgaaagcat |
31058252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 2 - 295
Target Start/End: Complemental strand, 31102986 - 31102687
Alignment:
| Q |
2 |
ttttcttcgacaaaaaatataaattgaaattccaacaccacacaacactaatactagagctcctaaagcaatgaataccgatcgaatgacattttttctc |
101 |
Q |
| |
|
|||||| ||| |||||| ||| || ||||||||||| |||| ||||||||||| |||||||||||||||||| ||||||||| ||| || |||||| ||| |
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| T |
31102986 |
ttttctccgaaaaaaaacatacatcgaaattccaactccactcaacactaatattagagctcctaaagcaataaataccgattgaaggatatttttgctc |
31102887 |
T |
|
| Q |
102 |
tttcgactattgtt------tgttggacaaggaaccaaacctgtgatatttccgcataagcctttgttattttttaatgattcaaacggagcaagaagaa |
195 |
Q |
| |
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|||| ||||| | | ||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
31102886 |
tttctactatggatctggcttgttgcacacggaaccaaacctgtgatatttccacataagcctttgttatttttgaatgattcaaacggagcacgaagaa |
31102787 |
T |
|
| Q |
196 |
aagctggaattttaggaagtgggccttctaactggttgtctgatatattaacaaaaaccaaattcctttcaaaattttgaggaatggttcctgaaagcat |
295 |
Q |
| |
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|||||||| ||| |||||||| || |||||||||||||||||||| ||||||||| ||||| || | |||| || ||||||||||||||||||||| |
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| T |
31102786 |
aagctggattttctggaagtggaccatctaactggttgtctgatatgttaacaaaatccaaactcatactaaaagttgaaggaatggttcctgaaagcat |
31102687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 31140345 - 31140099
Alignment:
| Q |
2 |
ttttcttcgacaaaaaatataaattgaaattccaacaccacacaacactaatactagagctcctaaagcaatgaataccgatcgaatgacattttttctc |
101 |
Q |
| |
|
||||||||||| ||| |||| || ||||||||||||||| |||| ||||| | |||||||||||||||||| ||||||||||| | ||||||||| ||| |
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| T |
31140345 |
ttttcttcgacccaaagtatacatcgaaattccaacaccaaacaatactaaaattagagctcctaaagcaattaataccgatcggaggacatttttgctc |
31140246 |
T |
|
| Q |
102 |
tttcgactattgtttgttggacaaggaaccaaacctgtgatatttccgcataagcctttgttattttttaatgattcaaacggagcaagaagaaaagctg |
201 |
Q |
| |
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|||||||| | ||||||| |||| ||| ||| |||||| || ||| ||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
31140245 |
tttcgact---------tccacaaggatccaagcctttgaaatttccacacaagtctttgttatttttgaatgattcaaacggagcatgaagaaaagctg |
31140155 |
T |
|
| Q |
202 |
gaattttaggaagtgggccttctaactggttgtctgatatattaacaaaaaccaaa |
257 |
Q |
| |
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|| | | ||||| || ||||||||||| |||| |||||| ||||||||| ||||| |
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| T |
31140154 |
gattgtccggaagcggcccttctaactgattgtttgatatgttaacaaaatccaaa |
31140099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 257
Target Start/End: Complemental strand, 31153363 - 31153117
Alignment:
| Q |
2 |
ttttcttcgacaaaaaatataaattgaaattccaacaccacacaacactaatactagagctcctaaagcaatgaataccgatcgaatgacattttttctc |
101 |
Q |
| |
|
|||||||||||| ||| |||| || ||||||||||||||| |||| ||||| | ||||||||| |||||||| ||||||||||| | ||||||||| ||| |
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| T |
31153363 |
ttttcttcgacacaaagtatacatcgaaattccaacaccaaacaatactaaaattagagctccaaaagcaattaataccgatcggaggacatttttgctc |
31153264 |
T |
|
| Q |
102 |
tttcgactattgtttgttggacaaggaaccaaacctgtgatatttccgcataagcctttgttattttttaatgattcaaacggagcaagaagaaaagctg |
201 |
Q |
| |
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|||||||| | ||||||| |||| ||| ||| |||||| || ||| ||||||||||||| |||||||||||||||||| |||||||||||| |
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| T |
31153263 |
tttcgact---------tccacaaggatccaagcctttgaaatttccacacaagtctttgttatttttgaatgattcaaacggagcatgaagaaaagctg |
31153173 |
T |
|
| Q |
202 |
gaattttaggaagtgggccttctaactggttgtctgatatattaacaaaaaccaaa |
257 |
Q |
| |
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|| | | ||||| | ||||||||||| ||||||||||| ||||||||| ||||| |
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| T |
31153172 |
gattgtccggaagccgcccttctaactgattgtctgatatgttaacaaaatccaaa |
31153117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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