View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2356_high_21 (Length: 300)

Name: NF2356_high_21
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2356_high_21
NF2356_high_21
[»] chr4 (2 HSPs)
chr4 (1-191)||(34794980-34795167)
chr4 (196-284)||(34794795-34794878)
[»] chr2 (1 HSPs)
chr2 (103-169)||(4275497-4275563)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 34795167 - 34794980
Alignment:
Q  1 aaagaaaaacaaagactgtgtgccaccgtagtaagtaagtaagtaagagtgaatgagtcactttttgtttgagaagtgattcctatttttgttgtacggt 100  Q
    ||||||||||||||||||||   ||||||||||||||||||||   || |||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  34795167 aaagaaaaacaaagactgtg---caccgtagtaagtaagtaagagtgaatgaatgagtcactttttgtttgagaagtgaatcctattttggttgtacggt 34795071  T
Q  101 caccctgtatttccgggcggatgtctattctgtccccttctatttcaccaaatctctcatatatccttcttcctaatcttatcaaaattat 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34795070 caccctgtatttccgggcggatgtctattctgtccccttctatttcaccaaatctctcatatatccttcttcctaatcttatcaaaattat 34794980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 34794878 - 34794795
Alignment:
Q  196 ccatttctcacttcgattttaatctcattttctatgtggcctgggttcttcaatgacttcgtttgttgccattattacaaattacattt 284  Q
    |||||||||||||||||||||||||||||||||||||||     |||||||||||| ||||||||||||||||||||||||||||||||    
T  34794878 ccatttctcacttcgattttaatctcattttctatgtgg-----gttcttcaatgatttcgtttgttgccattattacaaattacattt 34794795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 4275497 - 4275563
Alignment:
Q  103 ccctgtatttccgggcggatgtctattctgtccccttctatttcaccaaatctctcatatatccttc 169  Q
    ||||||||||||||| |||||||||||||||||||||||| |||| |||||||| ||  ||||||||    
T  4275497 ccctgtatttccggggggatgtctattctgtccccttctacttcatcaaatctcacacctatccttc 4275563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University