View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2356_high_23 (Length: 276)

Name: NF2356_high_23
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2356_high_23
NF2356_high_23
[»] chr7 (13 HSPs)
chr7 (18-269)||(31184323-31184575)
chr7 (18-269)||(31103243-31103495)
chr7 (18-268)||(31058800-31059051)
chr7 (18-268)||(31140603-31140854)
chr7 (18-159)||(31159545-31159686)
chr7 (18-142)||(31241665-31241789)
chr7 (21-214)||(31216089-31216282)
chr7 (18-126)||(14606660-14606768)
chr7 (18-126)||(16025837-16025945)
chr7 (18-117)||(15676325-15676424)
chr7 (18-126)||(15664490-15664598)
chr7 (18-126)||(16173313-16173421)
chr7 (18-127)||(17849283-17849392)
[»] scaffold0289 (2 HSPs)
scaffold0289 (18-126)||(4816-4924)
scaffold0289 (18-126)||(13649-13757)
[»] chr1 (3 HSPs)
chr1 (18-116)||(15002873-15002971)
chr1 (18-116)||(14531993-14532091)
chr1 (18-116)||(15011766-15011864)
[»] scaffold0400 (1 HSPs)
scaffold0400 (18-87)||(7283-7352)
[»] scaffold0365 (1 HSPs)
scaffold0365 (18-87)||(7927-7996)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 31184575 - 31184323
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31184575 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccctcttttcccaatcaaatg 31184476  T
Q  118 caatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatccttg 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31184475 caatggcttgtttttcattgtttattatttgatctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatccttg 31184376  T
Q  218 aaggttgatgatgttcctgtgtttgattcctctcaatgtttc-atctcactcg 269  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31184375 aaggttgatgatgttcctgtgtttgattcctctcaatgtttcaatctcactcg 31184323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 31103495 - 31103243
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31103495 atatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccctcttttcccaatcaaatg 31103396  T
Q  118 caatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatccttg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||| |||| ||    
T  31103395 caatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaaactaaaaatgagaacttagaatgtgagcaaaatccatg 31103296  T
Q  218 aaggttgatgatgttcctgtgtttgattcctctcaatgtttc-atctcactcg 269  Q
    ||| || ||||| |||||||||||||||||| |||| ||||| ||||||||||    
T  31103295 aagctttatgatattcctgtgtttgattcctgtcaaggtttcaatctcactcg 31103243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 31059051 - 31058800
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| |||||||  |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31059051 atatcgcgatgaattataggaggcgagcaatcatgatgcaagtaggacaaagcattggccacacctttaacaacattcaccctcttttcccaatcaaatg 31058952  T
Q  118 caatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatccttg 217  Q
    ||| ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||  |||| |||| ||    
T  31058951 caacggcttgtgtgtcattgtttagtatttgatctaagcttccaccttccaagaacttgtaaaccaaaaacgagaatttagaatgtgagcaaaatccatg 31058852  T
Q  218 aaggttgatgatgttcctgtgtttgattcctctcaatgtttc-atctcactc 268  Q
    ||| || ||||||||||| ||||| |||||| |||| ||||| |||||||||    
T  31058851 aagttttatgatgttcctatgtttaattcctgtcaaggtttcaatctcactc 31058800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 31140854 - 31140603
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||||||||||| ||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31140854 atatcacgatgaataataggaggagaacaatcatgatgcaagtaggacaaagcattggccacacctttaacaacattcaccctcttttcccaatcaaatg 31140755  T
Q  118 caatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatccttg 217  Q
    || |||||||| | ||| ||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||| |||||||||  |||| |||| ||    
T  31140754 cagtggcttgtgtatcactgtttagcatttgacctaagcttcctccttccaagaacttgtaaaccaaaaatgagaatttagaatgtgagcaaaatccatg 31140655  T
Q  218 aaggttgatgatgttcctgtgtttgattcctctcaatgtttc-atctcactc 268  Q
    ||| || ||||||||||||||| ||||||||  ||| ||||| |||||||||    
T  31140654 aagctttatgatgttcctgtgtctgattcctgacaaggtttcaatctcactc 31140603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 31159686 - 31159545
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31159686 atatcacgatgaacaataggaggagaacaatcatgatgcaagtaggacaaagcattggccacacctttaacaacattcaccctcttttcccaatcaaatg 31159587  T
Q  118 caatggcttgtttttcattgtttagtatttgatctaagcttc 159  Q
    || |||||||| | ||| ||||||| |||||| |||||||||    
T  31159586 cagtggcttgtgtatcactgtttagcatttgacctaagcttc 31159545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 31241789 - 31241665
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31241789 atatcacgatgaacaataggaggagaacaatcatgatgcaagtaggacaaagcattggccacacctttaacaacattcaccctcttttcccaatcaaatg 31241690  T
Q  118 caatggcttgtttttcattgtttag 142  Q
    || |||||||| | ||| |||||||    
T  31241689 cagtggcttgtgtatcactgtttag 31241665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 31216282 - 31216089
Alignment:
Q  21 tcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatgcaa 120  Q
    ||||| ||||| || ||||||  ||| || ||||||| ||||||||||||||  || |||||| |||||| |||||||||||||||||||||||||||||    
T  31216282 tcacggtgaactattggaggtatgcagtcatgatgcatgtaggacaaagcatcagccacacctctaacaatattcaccctcttttcccaatcaaatgcaa 31216183  T
Q  121 tggcttgtttttcattgtttagtatttga-tctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatcc 214  Q
    |||||||| | ||||||||||  |||||| || ||| |||||||||||| |||||| |||||||||||||||||  | |||||| ||||||||||    
T  31216182 tggcttgtgtgtcattgtttaacatttgagtcaaag-ttccaccttccaagaacttataaaccaaaaatgagaatcttgaatgtcggcaatatcc 31216089  T

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Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 14606768 - 14606660
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| ||||| |||||||| ||||||| |||| | ||||||||||| ||| ||||||  |||||||||||||| | |||||||||||    
T  14606768 atatctcgatgaacaattggaggcgagcaatcatgatgcatgtagcataaagcattggctacatctttaatgacattcaccctcttattccaatcaaatg 14606669  T
Q  118 caatggctt 126  Q
    |||| ||||    
T  14606668 caattgctt 14606660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 16025945 - 16025837
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| ||||| |||||||| ||||||| |||| | ||||||||||| ||| ||||||  |||||||||||||| | |||||||||||    
T  16025945 atatctcgatgaacaattggaggcgagcaatcatgatgcatgtagcataaagcattggctacatctttaatgacattcaccctcttattccaatcaaatg 16025846  T
Q  118 caatggctt 126  Q
    |||| ||||    
T  16025845 caattgctt 16025837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 15676325 - 15676424
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| |||||||||||||| || ||||  ||| | |||||||| || ||| |||||| ||||||||||| ||| | |||||||||||    
T  15676325 atatctcgatgaacaattggaggtgagcaatcatggtgcatatagtataaagcattagctacatctttaataacattcacccgcttattccaatcaaatg 15676424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 15664490 - 15664598
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| ||||| | |||||| || ||||  ||| | |||||||| || | | |||||| ||||||||||||||||| |||| ||||||    
T  15664490 atatctcgatgaacaattggaggggtgcaatcatggtgcatatagcataaagcattcgctatatctttaataacattcaccctctttttccaaccaaatg 15664589  T
Q  118 caatggctt 126  Q
    |||| ||||    
T  15664590 caattgctt 15664598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 16173421 - 16173313
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| ||||| |||||||| || ||||  ||| | |||||||| || ||| ||||||  |||||||||| ||||| ||||| |||||    
T  16173421 atatctcgatgaacaattggaggcgagcaatcatggtgcatatagcataaagcattagctacatctttaatgacattcacccgctttttccaattaaatg 16173322  T
Q  118 caatggctt 126  Q
    |||| ||||    
T  16173321 caattgctt 16173313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 17849392 - 17849283
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| |||||||||||||  |||||||  ||  | | |||||| || ||| ||||||  |||||||||| ||| | |||||||||||    
T  17849392 atatctcgatgaacaatcggaggtgagcaatgatgatgcatataacatagagcattagctacatctttaatgacattcacccgcttattccaatcaaatg 17849293  T
Q  118 caatggcttg 127  Q
    |||| |||||    
T  17849292 caattgcttg 17849283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 4816 - 4924
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| ||||| | |||||| || ||||  ||| | |||||||| || | | |||||| ||||||||||||||||| |||| ||||||    
T  4816 atatctcgatgaacaattggaggggtgcaatcatggtgcatatagcataaagcattcgctatatctttaataacattcaccctctttttccaaccaaatg 4915  T
Q  118 caatggctt 126  Q
    |||| ||||    
T  4916 caattgctt 4924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 13649 - 13757
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| ||||| | |||||| || ||||  ||| | |||||||| || | | |||||| ||||||||||||||||| |||| ||||||    
T  13649 atatctcgatgaacaattggaggggtgcaatcatggtgcatatagcataaagcattcgctatatctttaataacattcaccctctttttccaaccaaatg 13748  T
Q  118 caatggctt 126  Q
    |||| ||||    
T  13749 caattgctt 13757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 15002971 - 15002873
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaat 116  Q
    ||||| ||||||||||||||||| || ||||| |||||||  ||| | |||||||| || ||| ||||||  | |||||||||||| | ||||||||||    
T  15002971 atatctcgatgaacaataggaggggaacaatcatgatgcagatagcataaagcattagctacatctttaatgatattcaccctcttattccaatcaaat 15002873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 14531993 - 14532091
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaat 116  Q
    ||||| ||||||||||||||||||||||| || ||||| |  ||| | |||||||| || | | ||||||  |||||||||||| | | ||||||||||    
T  14531993 atatctcgatgaacaataggaggtgagcagtcatgatgtagatagcataaagcattagctatatctttaatgacattcaccctcctattccaatcaaat 14532091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 15011864 - 15011766
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaat 116  Q
    ||||| ||||||||||||||||| ||||| || |||||||  ||| | || ||||| || | | |||||| || |||||||||||| | ||||||||||    
T  15011864 atatctcgatgaacaataggaggcgagcagtcatgatgcagatagaataaggcattagctatatctttaataatattcaccctcttattccaatcaaat 15011766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 7352 - 7283
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaa 87  Q
    ||||||||||||||||| | ||||||||||| ||||||||  ||| | |||||||| || ||||||||||    
T  7352 atatcacgatgaacaattgaaggtgagcaattgtgatgcatatagcataaagcattagctacacctttaa 7283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 7996 - 7927
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaa 87  Q
    ||||||||||||||||| | ||||||||||| ||||||||  ||| | |||||||| || ||||||||||    
T  7996 atatcacgatgaacaattgaaggtgagcaattgtgatgcatatagcataaagcattagctacacctttaa 7927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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