View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2356_high_28 (Length: 249)
Name: NF2356_high_28
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 32243767 - 32243980
Alignment:
| Q |
19 |
ggtatgtccaaggaggaagtgtactggtgcttggggcctttatgggttacattctctgttgggttatacatgcaaggaagaagcctgagtccaagagtgg |
118 |
Q |
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| T |
32243767 |
ggtatgtccaaggaggaagtgtactggtgcttggggcctttatgggttacattctctgttgggttatacatgcaaggaagaagcctgagtccaagagtgg |
32243866 |
T |
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| Q |
119 |
ttgtaccatcgcgaagactgagaaacatgattagttactactctttacaacnnnnnnnnataggaggtatagaattaagtatcactcgtatatatttgtt |
218 |
Q |
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| T |
32243867 |
ttgtactatcgcgaagactgagaaacatgattagttactactctttactaactttttttataggaggtatagaattaagtatcactc----atatttgtt |
32243962 |
T |
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| Q |
219 |
tgatcaaaaccctgatat |
236 |
Q |
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| T |
32243963 |
tgatcaaaactctgatat |
32243980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 32248863 - 32249003
Alignment:
| Q |
19 |
ggtatgtccaaggaggaagtgtactggtgcttggggcctttatgggttacattctctgttgggttatacatgcaaggaaga---agcctgagtccaagag |
115 |
Q |
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|||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||| ||| |||||| ||||||| |||| ||||||| ||| |
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| T |
32248863 |
ggtatgtccagggaggaagtgtactagtgcttggggcctttatgggctacattcttggtttcgtttcacatgctaggaagaagcagcccgagtccaggag |
32248962 |
T |
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| Q |
116 |
tggttgtaccatcgcgaagactga-gaaacatgattagtta |
155 |
Q |
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| T |
32248963 |
tggttttagccccgtgaagactgaggaaacatgattagtta |
32249003 |
T |
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