View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2356_high_3 (Length: 524)
Name: NF2356_high_3
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 40 - 508
Target Start/End: Complemental strand, 17781238 - 17780763
Alignment:
| Q |
40 |
gttttaatgttagatgtcatagttttaagatctatcttcatggtgtaggaatgtacaaaactcttccttgtaaggcttccagaaagtcgaaggttcacgg |
139 |
Q |
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| T |
17781238 |
gttttaatcttagatgtcatagttttacgatctatcttcatggtgtaggaatgtacaaaactgttccttgtaaggcttccagaaagtcgaaggttcacgg |
17781139 |
T |
|
| Q |
140 |
tgccaaaaaacatgaagttgctatcagttcctttgtgccaaattcgtgacaatcataaggtatgaagtatgaacaaatatcatgcagttttgagttgatg |
239 |
Q |
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| T |
17781138 |
tgccaaaaaacatgaagttgctatcagttcctttgtgccaaattcgtgacaatcataaggtatgaagtatgaacaaatatcatgcagttttgagttgatg |
17781039 |
T |
|
| Q |
240 |
cctgttttgacgt-------tgtgcattttgcagacttacgggccaattatatcagcggtcccgcagcttctctcgaaattctcttttaatatgattgga |
332 |
Q |
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| T |
17781038 |
actgttttgacgacttaacctgtgcattttgcagacttacgggccaattatatcagcggtcccgcagcttctctcgaaattctcttttaatatgattgga |
17780939 |
T |
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| Q |
333 |
atttaatccttcgccgcaacttgctatcatgcactgtgaagtaatctcattaggcagccggttcttatctttattcggactccagacaaggaaggacttg |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17780938 |
atttaatccttcgccgcaacttgctatcatgcactgtgaagtaatctcattaggcagccggttcttatctttattcggactccagacaaggaaggacttg |
17780839 |
T |
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| Q |
433 |
taaatatcatagcttattatacaacaatgaaactttaatgttgaaaacaggaatatatatatcttgcatagttact |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17780838 |
taaatatcatagcttattatacaacaatgaaactttaatgttgaaaacaggaatatatatatcttgcatagttact |
17780763 |
T |
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