View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2356_high_33 (Length: 212)
Name: NF2356_high_33
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_high_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 187
Target Start/End: Original strand, 6224808 - 6224983
Alignment:
| Q |
12 |
agaagcataggaatgaatatgaataatcaataaaaacacgacactatcttgtattgacattctcagctgtgataccgttgttctcaacctcaacattcgc |
111 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
6224808 |
agaaacataggaatgaatatgaataatcaataaaaacacgacactatcttgcattgacattctcaactatgataccgttgttctcaacctcaacattcgc |
6224907 |
T |
|
| Q |
112 |
aatgaggtcaacaacttaaataataaagccttaccttatgatgtcggctacttcatggccgtagtcttatatataa |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6224908 |
aatgaggtcaacaacttaaataataaagccttaccttatgatgtcggctacttcatggccgtagtcttatatataa |
6224983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 54182243 - 54182409
Alignment:
| Q |
12 |
agaagcataggaatgaatatgaataatcaataaaaacacgacactatcttgtattgacattctcagctgtgataccgttgttctcaacctcaacattcgc |
111 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
54182243 |
agaaacataagaacgaatatgaataatcaatcaaaacacaacactatcttgtattgacattctcagctgtgatacccttgttctcaacctcaacatccgc |
54182342 |
T |
|
| Q |
112 |
aatgaggtcaacaacttaaataataaagccttaccttatgatgtcggctacttcatggccgtagtctt |
179 |
Q |
| |
|
|| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54182343 |
aacgaggtcaacaacttaaat-attaagccttaccttatgatgtcggctacttcatggccgtagtctt |
54182409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 19748765 - 19748932
Alignment:
| Q |
12 |
agaagcataggaatgaatatgaataatcaataaaaacacgacactatcttgtattgacattctcagctgtgataccgttgttctcaacctcaacattcgc |
111 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||| ||||| |||||||||||||| || |
|
|
| T |
19748765 |
agaaacataagaatgaatatgaataatcaatcaaaacacaacactatcttgcattgacattctcagttgtgatacccttgttttcaacctcaacatttgc |
19748864 |
T |
|
| Q |
112 |
aatgaggtcaacaacttaaataataaagccttaccttatgatgtcggctacttcatggccgtagtctt |
179 |
Q |
| |
|
|| ||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19748865 |
aacgaggtcaacaacttaaatattaaaaccttaccttatgatgttggctacttcatggccgtagtctt |
19748932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 5076576 - 5076421
Alignment:
| Q |
23 |
aatgaatatgaataatcaataaaaacacgacactatcttgtattgacattctcagctgtgataccgttgttctcaacctcaacattcgcaatgaggtcaa |
122 |
Q |
| |
|
|||||||||||||| ||||| ||||||| || ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||||||| |
|
|
| T |
5076576 |
aatgaatatgaata-tcaatcaaaacacatcattatcttgcattgacattctcagttgtgatacccttgttctcaacctcaacattcacaacgaggtcaa |
5076478 |
T |
|
| Q |
123 |
caacttaaataataaagccttaccttatgatgtcggctacttcatggccgtagtctt |
179 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5076477 |
caacttaaatattaaagccttaccttatgatgtcggctacttcatggccgtagtctt |
5076421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 7412638 - 7412804
Alignment:
| Q |
12 |
agaagcataggaatgaatatgaataatcaataaaaacacgacactatcttgtattgacattctcagctgtgataccgttgttctcaacctcaacattcgc |
111 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||| ||||||| |||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||| ||| |
|
|
| T |
7412638 |
agaaacataagaatgaatatgaata-tcaatcaaaacacagcactatcttgcattgacattctcatttgtgatacccttgctctcaacctcaacatccgc |
7412736 |
T |
|
| Q |
112 |
aatgaggtcaacaacttaaataataaagccttaccttatgatgtcggctacttcatggccgtagtctt |
179 |
Q |
| |
|
|| ||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7412737 |
aacgaggtcaacaacttaaatattaaagcctaaccttatgatgtcagctacttcatggccgtagtctt |
7412804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University