View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2356_high_34 (Length: 207)
Name: NF2356_high_34
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 3402688 - 3402865
Alignment:
| Q |
15 |
gagagatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggca |
114 |
Q |
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| T |
3402688 |
gagatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggca |
3402787 |
T |
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| Q |
115 |
cacaagctacaccaatataagccatgtgtacaacaaaattagaatagaaaatattagcaagaattcataatttataat |
192 |
Q |
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| T |
3402788 |
cacaagctacaacaatataagccatgtgtacaacaaaattagaatagaaaatattagcaagaattcataatttataat |
3402865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 3389401 - 3389569
Alignment:
| Q |
15 |
gagagatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggca |
114 |
Q |
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| T |
3389401 |
gagatatgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggaa |
3389500 |
T |
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| Q |
115 |
cacaagctacaccaatataagccatgtgtacaacaaaattagaatagaaaatattagcaagaattcataatt |
186 |
Q |
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| T |
3389501 |
cacaagctacaataacataagccatgtgtacaa---agttagaatcaatgatattagcaagaatttataatt |
3389569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 26 - 139
Target Start/End: Original strand, 3369436 - 3369549
Alignment:
| Q |
26 |
tccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggcacacaagctaca |
125 |
Q |
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| T |
3369436 |
tccacaataataaccttaccatttagaggcaaagctttgtgacaattccttaaaatttctaagcatttttcatctggccaattatggcacacaagctaca |
3369535 |
T |
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| Q |
126 |
ccaatataagccat |
139 |
Q |
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||||||| |||| |
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| T |
3369536 |
aaaatataacccat |
3369549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 3348122 - 3348207
Alignment:
| Q |
26 |
tccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatg |
111 |
Q |
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| T |
3348122 |
tccacaagaatcacctttccattttgaggcaaagctttgtaacaattgctaaatatttctatgcatttttcatccgaccaattatg |
3348207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 3297936 - 3298012
Alignment:
| Q |
38 |
accttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggca |
114 |
Q |
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| T |
3297936 |
acctttccatttggaggtaaagctttgtaacaattgcttaagatttctatgcatttttcatccgaccagttgtggca |
3298012 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 114
Target Start/End: Complemental strand, 23994463 - 23994381
Alignment:
| Q |
32 |
ataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggca |
114 |
Q |
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| T |
23994463 |
ataatgaccttcccatttggtggtaaagctttgtgacaattgcttaaaatttgtatgcattgttcatccgaccagttatggca |
23994381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 43365626 - 43365532
Alignment:
| Q |
20 |
atgaaatccacaataatgaccttaccatttgaaggcaaagctttgtgacaattgattaaagtttctaagcatttttcatccgaccaattatggca |
114 |
Q |
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| T |
43365626 |
atgaactccacaataatcacttttccatttggtgatagagctttgtgacaattgcttaaaaattctatgcatttttcatccgaccaattatggca |
43365532 |
T |
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