View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2356_high_4 (Length: 486)
Name: NF2356_high_4
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 13 - 468
Target Start/End: Complemental strand, 39684134 - 39683679
Alignment:
| Q |
13 |
aatataacgaactaattttcaaattcgattagttggaagagacgatctgaaagtgcttcgaataaaataatcttagtatattgaacatagggaaaaccaa |
112 |
Q |
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| T |
39684134 |
aatataacgaactaattttcaaattcgattagttggaagagacgatctgaaagtgcttcgaataaagtaatcttagtatattgaacatagggaaaaccaa |
39684035 |
T |
|
| Q |
113 |
agaatnnnnnnnnnnnnnttactcaaccaaggcaaagcatctggtgaggtgccaactctttttctttttgtcgaaagattaggagatgttagcaagaatg |
212 |
Q |
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| T |
39684034 |
agaataaaaatgaaaaaattactcaaccaaggcaaagcatctggtgaggtgccaactctttttctttttgtcgaaagattaggagatgttagcaagaatg |
39683935 |
T |
|
| Q |
213 |
tctttgaagtcgtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcagattgttctaagaattcaacaatttttggatgat |
312 |
Q |
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| T |
39683934 |
tctttaaagtcgtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcagattgttctaagaattcaacaatttttggatgat |
39683835 |
T |
|
| Q |
313 |
gaatcactttgatgctcacccaaatcctctccatatcttctcctcctttgcctactagcaccggaacatgccctttgttactttgtttcatatcttctct |
412 |
Q |
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| T |
39683834 |
gaatcactttgatgctcacccaaatcctctccatatcttctcctcctttgcttactagcaccggaacatgccctttgttactttgtttcatatcttctct |
39683735 |
T |
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| Q |
413 |
ctaattcaaatattgattcttctctttggcttttgctttatatagagcatatgcat |
468 |
Q |
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| T |
39683734 |
ctaattcaaatattgattcttctctttggcttttgctttatatagagcatatgcat |
39683679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 198 - 420
Target Start/End: Complemental strand, 39689414 - 39689180
Alignment:
| Q |
198 |
atgttagcaagaatgtctttgaagtcgtcaacatcacatatgattctaagcacaccttgttggtatccatactctttagcagattgttctaagaattcaa |
297 |
Q |
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||||||||||||||| |||||||| |||| ||||| | |||||||||||||||| |||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
39689414 |
atgttagcaagaatgactttgaagatctcaatatcacgtctgattctaagcacaccctgttggtatccatattctttagcagattgttccaacaattcaa |
39689315 |
T |
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| Q |
298 |
caatttttggatgatgaatcactttgatgctcacccaaatcctctccatatcttctcctcc------------tttgcctactagcaccggaacatgccc |
385 |
Q |
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| T |
39689314 |
caattttgggatggtgaatcactttgatgctcacccaaatcctctccatatcttcttcttcttcttcttcctttttgcctactagcactggaacatgccc |
39689215 |
T |
|
| Q |
386 |
tttgttactttgtttcatatcttctctctaattca |
420 |
Q |
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|||||||||||||||||| ||| || ||| ||||| |
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| T |
39689214 |
tttgttactttgtttcatctctcctatctcattca |
39689180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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