View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2356_low_14 (Length: 358)
Name: NF2356_low_14
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 48 - 340
Target Start/End: Complemental strand, 34771760 - 34771467
Alignment:
| Q |
48 |
ggtaaaagtctatcaagtttggaaagatgtaatgtaacatgtagcatggttgaaatgaacatgatgaacatgaacatgatcatgaaatctaaacacattc |
147 |
Q |
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| T |
34771760 |
ggtaaaagtctatcaagtttggaaagatgtaatgtaacatgtagcatggttgaaatgaacatgatgaacatgaacatgatcatgaaatctaaacacattc |
34771661 |
T |
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| Q |
148 |
caacnnnnnnn-catcaacaatgaaatgtaagaattgattgaagatgaaaataataaataggtaacaaccatcccaaatattagacatttttcttagaag |
246 |
Q |
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| T |
34771660 |
caacaaaaaaaacatcaacaatgaaatgtaagaattgattgaagatgaaaataataaataggtaacaaccatcccaaatattagacatttttcttagaag |
34771561 |
T |
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| Q |
247 |
ttgaagagttcaaaagcaaaaaacagaagagtgtgaatgtgaatatgcatatgaatgtgtgtgtgttgaagtaacaatatagagagggaagtaa |
340 |
Q |
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| T |
34771560 |
ttgaagagttcaaaagcaaaaaacagaagagtgtgaatgtgaatatgcatatgaatgtgtgtgtgttgaagtaacaatatagagagggaagtaa |
34771467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 292
Target Start/End: Complemental strand, 34781161 - 34781083
Alignment:
| Q |
215 |
ccatcccaaatattagacatttttcttagaagttgaagagttcaaaagcaa-aaaacagaagagtgtgaatgtgaatat |
292 |
Q |
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| T |
34781161 |
ccatcccaaatattagacatttttatcagaagttgaagagttcaaaagcaaaaaaacagaagaatgtaaatgtgaatat |
34781083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 310
Target Start/End: Complemental strand, 34796000 - 34795968
Alignment:
| Q |
278 |
tgtgaatgtgaatatgcatatgaatgtgtgtgt |
310 |
Q |
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| T |
34796000 |
tgtgaatgtgaatatgcatatgaatgtgtgtgt |
34795968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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