View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2356_low_15 (Length: 339)

Name: NF2356_low_15
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2356_low_15
NF2356_low_15
[»] chr2 (4 HSPs)
chr2 (23-170)||(30736139-30736286)
chr2 (172-221)||(3555332-3555381)
chr2 (180-219)||(11349504-11349543)
chr2 (180-222)||(3653376-3653418)
[»] chr8 (4 HSPs)
chr8 (171-291)||(34060570-34060690)
chr8 (172-221)||(34061625-34061674)
chr8 (172-221)||(35634394-35634443)
chr8 (172-204)||(34177284-34177316)
[»] chr1 (1 HSPs)
chr1 (172-221)||(17691301-17691350)
[»] chr7 (5 HSPs)
chr7 (180-219)||(20425568-20425607)
chr7 (172-218)||(42362532-42362578)
chr7 (172-221)||(3914220-3914269)
chr7 (180-221)||(5457204-5457245)
chr7 (172-221)||(13044754-13044803)
[»] chr6 (1 HSPs)
chr6 (180-221)||(26463269-26463310)
[»] chr5 (1 HSPs)
chr5 (172-221)||(11741814-11741863)
[»] chr4 (1 HSPs)
chr4 (172-204)||(39538162-39538194)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 30736286 - 30736139
Alignment:
Q  23 aattcttgacaaatgcccattattcttaatgtttaatggagatgagaaccactgggatatgtttaatagagtttcaagtaatggaagaagagagagttca 122  Q
    |||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30736286 aattcttgacaaatacccattattcttaatgtttaatggagatgaaaatcactgggatatgtttaatagagtttcaagtaatggaagaagagagagttca 30736187  T
Q  123 tgcttgttgctattccaattcattcgtggggttcgcacgataaactca 170  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||    
T  30736186 tgctcgttgctattccaattcattcgtggggttcgcacgataaactca 30736139  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 3555332 - 3555381
Alignment:
Q  172 ttgcattctttaatcatttaaaacttcgtccctcaaccaagttaatcact 221  Q
    ||||||||||||||||||||||| ||||||| | |||| |||||||||||    
T  3555332 ttgcattctttaatcatttaaaatttcgtcctttaacccagttaatcact 3555381  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 11349543 - 11349504
Alignment:
Q  180 tttaatcatttaaaacttcgtccctcaaccaagttaatca 219  Q
    ||||||||||||||| |||||||||||||| |||||||||    
T  11349543 tttaatcatttaaaatttcgtccctcaacccagttaatca 11349504  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 3653418 - 3653376
Alignment:
Q  180 tttaatcatttaaaacttcgtccctcaaccaagttaatcacta 222  Q
    ||||||||||||||| ||||||||||  |||||||||||||||    
T  3653418 tttaatcatttaaaatttcgtccctcttccaagttaatcacta 3653376  T

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Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 171 - 291
Target Start/End: Original strand, 34060570 - 34060690
Alignment:
Q  171 gttgcattctttaatcatttaaaacttcgtccctcaaccaagttaatcactaattagaagtgtttttgctgacgtggtagaacgactatgcaaaatggcc 270  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||| | ||||||||| ||||||||||    
T  34060570 gttgcattctttaatcatttaaaacttcatccctcaaccaagttaatcactaattatgagtgtttttgctgacgtggcaaaacgactatccaaaatggcc 34060669  T
Q  271 atgaaaagactattttacccc 291  Q
    |||||||||||||||||||||    
T  34060670 atgaaaagactattttacccc 34060690  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 34061674 - 34061625
Alignment:
Q  172 ttgcattctttaatcatttaaaacttcgtccctcaaccaagttaatcact 221  Q
    ||||||||||||||||||||||| ||||||| |  |||||||||||||||    
T  34061674 ttgcattctttaatcatttaaaatttcgtcctttgaccaagttaatcact 34061625  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 35634443 - 35634394
Alignment:
Q  172 ttgcattctttaatcatttaaaacttcgtccctcaaccaagttaatcact 221  Q
    ||||||| ||||||||||||||| ||||||| | |||||| |||||||||    
T  35634443 ttgcattgtttaatcatttaaaatttcgtcctttaaccaacttaatcact 35634394  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 204
Target Start/End: Complemental strand, 34177316 - 34177284
Alignment:
Q  172 ttgcattctttaatcatttaaaacttcgtccct 204  Q
    ||||||||||||||||||||||| |||||||||    
T  34177316 ttgcattctttaatcatttaaaatttcgtccct 34177284  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 17691301 - 17691350
Alignment:
Q  172 ttgcattctttaatcatttaaaacttcgtccctcaaccaagttaatcact 221  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  17691301 ttgcattgtttaatcatttaaaatttcgtccctcaaccaagttaaccact 17691350  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 219
Target Start/End: Original strand, 20425568 - 20425607
Alignment:
Q  180 tttaatcatttaaaacttcgtccctcaaccaagttaatca 219  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  20425568 tttaatcacttaaaatttcgtccctcaaccaagttaatca 20425607  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 42362532 - 42362578
Alignment:
Q  172 ttgcattctttaatcatttaaaacttcgtccctcaaccaagttaatc 218  Q
    ||||||||||||||||||||||| ||||||| | |||| ||||||||    
T  42362532 ttgcattctttaatcatttaaaatttcgtcctttaacccagttaatc 42362578  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 3914220 - 3914269
Alignment:
Q  172 ttgcattctttaatcatttaaaacttcgtccctcaaccaagttaatcact 221  Q
    ||||||| ||||||||||||||| ||||||||||  |||| |||||||||    
T  3914220 ttgcattgtttaatcatttaaaatttcgtccctcttccaacttaatcact 3914269  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 5457245 - 5457204
Alignment:
Q  180 tttaatcatttaaaacttcgtccctcaaccaagttaatcact 221  Q
    ||||||||||||||| ||||||||||| || |||||||||||    
T  5457245 tttaatcatttaaaatttcgtccctcatcccagttaatcact 5457204  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 13044754 - 13044803
Alignment:
Q  172 ttgcattctttaatcatttaaaacttcgtccctcaaccaagttaatcact 221  Q
    ||||||| ||||||||||||||| ||||||||| ||| || |||||||||    
T  13044754 ttgcattgtttaatcatttaaaaattcgtcccttaacaaacttaatcact 13044803  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 26463269 - 26463310
Alignment:
Q  180 tttaatcatttaaaacttcgtccctcaaccaagttaatcact 221  Q
    ||||||||||||||| ||||||||||| || |||||||||||    
T  26463269 tttaatcatttaaaatttcgtccctcatcccagttaatcact 26463310  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 11741863 - 11741814
Alignment:
Q  172 ttgcattctttaatcatttaaaacttcgtccctcaaccaagttaatcact 221  Q
    ||||||||||||||||||||||| ||||||| |  ||| |||||||||||    
T  11741863 ttgcattctttaatcatttaaaatttcgtcctttgacccagttaatcact 11741814  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 39538162 - 39538194
Alignment:
Q  172 ttgcattctttaatcatttaaaacttcgtccct 204  Q
    ||||||||||||||||||||||| |||||||||    
T  39538162 ttgcattctttaatcatttaaaatttcgtccct 39538194  T

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