View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2356_low_18 (Length: 318)
Name: NF2356_low_18
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 150 - 315
Target Start/End: Complemental strand, 43366655 - 43366490
Alignment:
| Q |
150 |
taagcaaatagaggtagttgacaatttttaaggacaattttttcttaacatgtgcacagttcaattcaatgcactatgaaacagtaagatagaggaacta |
249 |
Q |
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| T |
43366655 |
taagcaaatggaggtagttgacaatttttaaggacaattttttcttaacatgtgcacagttcaattcaatgcactatgaaacagcaagatagaggaacta |
43366556 |
T |
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| Q |
250 |
ctacttacattcaaagaacaaaaatgtaacatgaagatagagatggttagtgtttgtggcttctat |
315 |
Q |
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| T |
43366555 |
ctacttacattcaaagaacaaaaatgtaacatcaagatagagatggttagtgtttgtggcttctat |
43366490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 43366867 - 43366734
Alignment:
| Q |
17 |
aattcaagatggtgattccaagtttccaacttagatcaaaatcaaatcagttgaatatgactgatacaaatcaaaatcaccataactgaaactacaagtt |
116 |
Q |
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| T |
43366867 |
aattcaagatggtgattccaagtttccaacttagatcaaaatcaaatcagttgaatatgactgatacaaatcaaaatcaccacaactgaaactacaagtt |
43366768 |
T |
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| Q |
117 |
cttatgctaaagactaatctcaagggaactcatt |
150 |
Q |
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| T |
43366767 |
cgtatgctaaagactaatctcaagggaactcatt |
43366734 |
T |
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