View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2356_low_2 (Length: 555)
Name: NF2356_low_2
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 26708417 - 26708085
Alignment:
| Q |
20 |
ccttcccctttcatttgcatcttttcaaaattgtcccttcaaaaattatacctttttagagaaatttgtcgcttcaatattcagagtgctcagtggtctt |
119 |
Q |
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| T |
26708417 |
ccttcccctttcatttgcatcttttcaaaattgtcccttcaaaaattatacctttttagataaatttgtcgcttcaatattcagagtgctcagtggtctt |
26708318 |
T |
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| Q |
120 |
gacgccatatttgtatcattctcaattctttgttatcaaatcctgtctttgactatatctaacaatgtaggtgtaggatttttgatataccttgtgccta |
219 |
Q |
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| T |
26708317 |
gacgccatatttgaataattttcaattctttgttatcaaatcctctctttgactatatctaacaatgtaggtgtaggatttttggtataccttgtgccta |
26708218 |
T |
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| Q |
220 |
ttcatcaattttgttttacattttttagaaaaaggtaaggttcctattttaatgtttttaggttcatcttataagcgttcaacatggtgaaactgttatt |
319 |
Q |
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| T |
26708217 |
ttcatcaattttgttttacattttttagaaaaaggtaaggtttctattttaatgtttttaggttcatgttataagcgttcaatatgatgaaactgttatt |
26708118 |
T |
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| Q |
320 |
ttgtgaaaaactttaaagtgtagtttttgtcaa |
352 |
Q |
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| T |
26708117 |
ttgtgaaaaattttaaagtgtagtttttgtcaa |
26708085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 383 - 530
Target Start/End: Complemental strand, 26707994 - 26707847
Alignment:
| Q |
383 |
attcacttttaattcaaatatagattataatagtatctttnnnnnnnccaatttcaaataaaacaatatttgcattattatctctcttccatctactcca |
482 |
Q |
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| T |
26707994 |
attcacttttaattcaaatatagattataatagtatcgttaaaaaaaccaatttcaaataaaacaatatttgcattattatctctcttccatctactcaa |
26707895 |
T |
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| Q |
483 |
ttgattgtgtgcaaacaattaatgtcaaatatatattcgttttcaata |
530 |
Q |
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| T |
26707894 |
ttgattgtgtgcaaacaatcaatgtcaaatatatattcgttttcaata |
26707847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 434 - 528
Target Start/End: Original strand, 26706205 - 26706299
Alignment:
| Q |
434 |
tttcaaataaaacaatatttgcattattatctctcttccatctactccattgattgtgtgcaaacaattaatgtcaaatatatattcgttttcaa |
528 |
Q |
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| T |
26706205 |
tttcaaataaaagaatatttccattcttacctctcttccgtctaactcattgattgtgtgcaaataatcaatgtaaaaaatatattcattttcaa |
26706299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 444 - 517
Target Start/End: Original strand, 18443714 - 18443787
Alignment:
| Q |
444 |
aacaatatttgcattattatctctcttccatctactccattgattgtgtgcaaacaattaatgtcaaatatata |
517 |
Q |
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| T |
18443714 |
aacaaaatttgcattcttacctctcttccatctacactattgattgtgtgcaaacaatcaatatcgaatatata |
18443787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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