View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2356_low_21 (Length: 300)
Name: NF2356_low_21
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 34795167 - 34794980
Alignment:
| Q |
1 |
aaagaaaaacaaagactgtgtgccaccgtagtaagtaagtaagtaagagtgaatgagtcactttttgtttgagaagtgattcctatttttgttgtacggt |
100 |
Q |
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| T |
34795167 |
aaagaaaaacaaagactgtg---caccgtagtaagtaagtaagagtgaatgaatgagtcactttttgtttgagaagtgaatcctattttggttgtacggt |
34795071 |
T |
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| Q |
101 |
caccctgtatttccgggcggatgtctattctgtccccttctatttcaccaaatctctcatatatccttcttcctaatcttatcaaaattat |
191 |
Q |
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| T |
34795070 |
caccctgtatttccgggcggatgtctattctgtccccttctatttcaccaaatctctcatatatccttcttcctaatcttatcaaaattat |
34794980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 34794878 - 34794795
Alignment:
| Q |
196 |
ccatttctcacttcgattttaatctcattttctatgtggcctgggttcttcaatgacttcgtttgttgccattattacaaattacattt |
284 |
Q |
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| T |
34794878 |
ccatttctcacttcgattttaatctcattttctatgtgg-----gttcttcaatgatttcgtttgttgccattattacaaattacattt |
34794795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 4275497 - 4275563
Alignment:
| Q |
103 |
ccctgtatttccgggcggatgtctattctgtccccttctatttcaccaaatctctcatatatccttc |
169 |
Q |
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| T |
4275497 |
ccctgtatttccggggggatgtctattctgtccccttctacttcatcaaatctcacacctatccttc |
4275563 |
T |
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