View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2356_low_24 (Length: 276)

Name: NF2356_low_24
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2356_low_24
NF2356_low_24
[»] chr7 (13 HSPs)
chr7 (18-269)||(31184323-31184575)
chr7 (18-269)||(31103243-31103495)
chr7 (18-268)||(31058800-31059051)
chr7 (18-268)||(31140603-31140854)
chr7 (18-159)||(31159545-31159686)
chr7 (18-142)||(31241665-31241789)
chr7 (21-214)||(31216089-31216282)
chr7 (18-126)||(14606660-14606768)
chr7 (18-126)||(16025837-16025945)
chr7 (18-117)||(15676325-15676424)
chr7 (18-126)||(15664490-15664598)
chr7 (18-126)||(16173313-16173421)
chr7 (18-127)||(17849283-17849392)
[»] scaffold0289 (2 HSPs)
scaffold0289 (18-126)||(4816-4924)
scaffold0289 (18-126)||(13649-13757)
[»] chr1 (3 HSPs)
chr1 (18-116)||(15002873-15002971)
chr1 (18-116)||(14531993-14532091)
chr1 (18-116)||(15011766-15011864)
[»] scaffold0400 (1 HSPs)
scaffold0400 (18-87)||(7283-7352)
[»] scaffold0365 (1 HSPs)
scaffold0365 (18-87)||(7927-7996)


Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 31184575 - 31184323
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31184575 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccctcttttcccaatcaaatg 31184476  T
Q  118 caatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatccttg 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31184475 caatggcttgtttttcattgtttattatttgatctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatccttg 31184376  T
Q  218 aaggttgatgatgttcctgtgtttgattcctctcaatgtttc-atctcactcg 269  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31184375 aaggttgatgatgttcctgtgtttgattcctctcaatgtttcaatctcactcg 31184323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 269
Target Start/End: Complemental strand, 31103495 - 31103243
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31103495 atatcacgatgaataataggaggtgagcaatcatgatgcaagtaggacaaagcattggcgacacctttaacaacattcaccctcttttcccaatcaaatg 31103396  T
Q  118 caatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatccttg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||| |||| ||    
T  31103395 caatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaaactaaaaatgagaacttagaatgtgagcaaaatccatg 31103296  T
Q  218 aaggttgatgatgttcctgtgtttgattcctctcaatgtttc-atctcactcg 269  Q
    ||| || ||||| |||||||||||||||||| |||| ||||| ||||||||||    
T  31103295 aagctttatgatattcctgtgtttgattcctgtcaaggtttcaatctcactcg 31103243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 31059051 - 31058800
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| |||||||  |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31059051 atatcgcgatgaattataggaggcgagcaatcatgatgcaagtaggacaaagcattggccacacctttaacaacattcaccctcttttcccaatcaaatg 31058952  T
Q  118 caatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatccttg 217  Q
    ||| ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||  |||| |||| ||    
T  31058951 caacggcttgtgtgtcattgtttagtatttgatctaagcttccaccttccaagaacttgtaaaccaaaaacgagaatttagaatgtgagcaaaatccatg 31058852  T
Q  218 aaggttgatgatgttcctgtgtttgattcctctcaatgtttc-atctcactc 268  Q
    ||| || ||||||||||| ||||| |||||| |||| ||||| |||||||||    
T  31058851 aagttttatgatgttcctatgtttaattcctgtcaaggtttcaatctcactc 31058800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 31140854 - 31140603
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||||||||||| ||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31140854 atatcacgatgaataataggaggagaacaatcatgatgcaagtaggacaaagcattggccacacctttaacaacattcaccctcttttcccaatcaaatg 31140755  T
Q  118 caatggcttgtttttcattgtttagtatttgatctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatccttg 217  Q
    || |||||||| | ||| ||||||| |||||| |||||||||| ||||||| |||||||||||||||||||||||| |||||||||  |||| |||| ||    
T  31140754 cagtggcttgtgtatcactgtttagcatttgacctaagcttcctccttccaagaacttgtaaaccaaaaatgagaatttagaatgtgagcaaaatccatg 31140655  T
Q  218 aaggttgatgatgttcctgtgtttgattcctctcaatgtttc-atctcactc 268  Q
    ||| || ||||||||||||||| ||||||||  ||| ||||| |||||||||    
T  31140654 aagctttatgatgttcctgtgtctgattcctgacaaggtttcaatctcactc 31140603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 159
Target Start/End: Complemental strand, 31159686 - 31159545
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31159686 atatcacgatgaacaataggaggagaacaatcatgatgcaagtaggacaaagcattggccacacctttaacaacattcaccctcttttcccaatcaaatg 31159587  T
Q  118 caatggcttgtttttcattgtttagtatttgatctaagcttc 159  Q
    || |||||||| | ||| ||||||| |||||| |||||||||    
T  31159586 cagtggcttgtgtatcactgtttagcatttgacctaagcttc 31159545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 18 - 142
Target Start/End: Complemental strand, 31241789 - 31241665
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  31241789 atatcacgatgaacaataggaggagaacaatcatgatgcaagtaggacaaagcattggccacacctttaacaacattcaccctcttttcccaatcaaatg 31241690  T
Q  118 caatggcttgtttttcattgtttag 142  Q
    || |||||||| | ||| |||||||    
T  31241689 cagtggcttgtgtatcactgtttag 31241665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 31216282 - 31216089
Alignment:
Q  21 tcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatgcaa 120  Q
    ||||| ||||| || ||||||  ||| || ||||||| ||||||||||||||  || |||||| |||||| |||||||||||||||||||||||||||||    
T  31216282 tcacggtgaactattggaggtatgcagtcatgatgcatgtaggacaaagcatcagccacacctctaacaatattcaccctcttttcccaatcaaatgcaa 31216183  T
Q  121 tggcttgtttttcattgtttagtatttga-tctaagcttccaccttccatgaacttgtaaaccaaaaatgagaacttagaatgttggcaatatcc 214  Q
    |||||||| | ||||||||||  |||||| || ||| |||||||||||| |||||| |||||||||||||||||  | |||||| ||||||||||    
T  31216182 tggcttgtgtgtcattgtttaacatttgagtcaaag-ttccaccttccaagaacttataaaccaaaaatgagaatcttgaatgtcggcaatatcc 31216089  T

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Target: chr7; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 14606768 - 14606660
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| ||||| |||||||| ||||||| |||| | ||||||||||| ||| ||||||  |||||||||||||| | |||||||||||    
T  14606768 atatctcgatgaacaattggaggcgagcaatcatgatgcatgtagcataaagcattggctacatctttaatgacattcaccctcttattccaatcaaatg 14606669  T
Q  118 caatggctt 126  Q
    |||| ||||    
T  14606668 caattgctt 14606660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 16025945 - 16025837
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| ||||| |||||||| ||||||| |||| | ||||||||||| ||| ||||||  |||||||||||||| | |||||||||||    
T  16025945 atatctcgatgaacaattggaggcgagcaatcatgatgcatgtagcataaagcattggctacatctttaatgacattcaccctcttattccaatcaaatg 16025846  T
Q  118 caatggctt 126  Q
    |||| ||||    
T  16025845 caattgctt 16025837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 15676325 - 15676424
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| |||||||||||||| || ||||  ||| | |||||||| || ||| |||||| ||||||||||| ||| | |||||||||||    
T  15676325 atatctcgatgaacaattggaggtgagcaatcatggtgcatatagtataaagcattagctacatctttaataacattcacccgcttattccaatcaaatg 15676424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 15664490 - 15664598
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| ||||| | |||||| || ||||  ||| | |||||||| || | | |||||| ||||||||||||||||| |||| ||||||    
T  15664490 atatctcgatgaacaattggaggggtgcaatcatggtgcatatagcataaagcattcgctatatctttaataacattcaccctctttttccaaccaaatg 15664589  T
Q  118 caatggctt 126  Q
    |||| ||||    
T  15664590 caattgctt 15664598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 16173421 - 16173313
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| ||||| |||||||| || ||||  ||| | |||||||| || ||| ||||||  |||||||||| ||||| ||||| |||||    
T  16173421 atatctcgatgaacaattggaggcgagcaatcatggtgcatatagcataaagcattagctacatctttaatgacattcacccgctttttccaattaaatg 16173322  T
Q  118 caatggctt 126  Q
    |||| ||||    
T  16173321 caattgctt 16173313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 17849392 - 17849283
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| |||||||||||||  |||||||  ||  | | |||||| || ||| ||||||  |||||||||| ||| | |||||||||||    
T  17849392 atatctcgatgaacaatcggaggtgagcaatgatgatgcatataacatagagcattagctacatctttaatgacattcacccgcttattccaatcaaatg 17849293  T
Q  118 caatggcttg 127  Q
    |||| |||||    
T  17849292 caattgcttg 17849283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 4816 - 4924
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| ||||| | |||||| || ||||  ||| | |||||||| || | | |||||| ||||||||||||||||| |||| ||||||    
T  4816 atatctcgatgaacaattggaggggtgcaatcatggtgcatatagcataaagcattcgctatatctttaataacattcaccctctttttccaaccaaatg 4915  T
Q  118 caatggctt 126  Q
    |||| ||||    
T  4916 caattgctt 4924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 13649 - 13757
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaatg 117  Q
    ||||| ||||||||||| ||||| | |||||| || ||||  ||| | |||||||| || | | |||||| ||||||||||||||||| |||| ||||||    
T  13649 atatctcgatgaacaattggaggggtgcaatcatggtgcatatagcataaagcattcgctatatctttaataacattcaccctctttttccaaccaaatg 13748  T
Q  118 caatggctt 126  Q
    |||| ||||    
T  13749 caattgctt 13757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 15002971 - 15002873
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaat 116  Q
    ||||| ||||||||||||||||| || ||||| |||||||  ||| | |||||||| || ||| ||||||  | |||||||||||| | ||||||||||    
T  15002971 atatctcgatgaacaataggaggggaacaatcatgatgcagatagcataaagcattagctacatctttaatgatattcaccctcttattccaatcaaat 15002873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 14531993 - 14532091
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaat 116  Q
    ||||| ||||||||||||||||||||||| || ||||| |  ||| | |||||||| || | | ||||||  |||||||||||| | | ||||||||||    
T  14531993 atatctcgatgaacaataggaggtgagcagtcatgatgtagatagcataaagcattagctatatctttaatgacattcaccctcctattccaatcaaat 14532091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 15011864 - 15011766
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaacaacattcaccctcttttcccaatcaaat 116  Q
    ||||| ||||||||||||||||| ||||| || |||||||  ||| | || ||||| || | | |||||| || |||||||||||| | ||||||||||    
T  15011864 atatctcgatgaacaataggaggcgagcagtcatgatgcagatagaataaggcattagctatatctttaataatattcaccctcttattccaatcaaat 15011766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 7352 - 7283
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaa 87  Q
    ||||||||||||||||| | ||||||||||| ||||||||  ||| | |||||||| || ||||||||||    
T  7352 atatcacgatgaacaattgaaggtgagcaattgtgatgcatatagcataaagcattagctacacctttaa 7283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 7996 - 7927
Alignment:
Q  18 atatcacgatgaacaataggaggtgagcaatcgtgatgcaagtaggacaaagcattggcaacacctttaa 87  Q
    ||||||||||||||||| | ||||||||||| ||||||||  ||| | |||||||| || ||||||||||    
T  7996 atatcacgatgaacaattgaaggtgagcaattgtgatgcatatagcataaagcattagctacacctttaa 7927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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