View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2356_low_33 (Length: 235)
Name: NF2356_low_33
Description: NF2356
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2356_low_33 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 31118877 - 31118790
Alignment:
| Q |
1 |
ttaagatgaaataccagtagctaggtcaaaagttagaagaacttagaaacaatatctatgacatatttctaaaactaatacacaatctg |
89 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
31118877 |
ttaagatgaaataccagtagctaggtcaaa-gttagaagaacttagaaacaatatctatgacatatttccaaaactaatacacaatctg |
31118790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 118 - 219
Target Start/End: Complemental strand, 31118761 - 31118659
Alignment:
| Q |
118 |
agtcttgaagggacatgcataaatgagcaaaatatatccatgcatgnnnnnnnntt-atataagggagaggaaatcatgcatacagtggatggaggtgga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31118761 |
agtcttgaagggacatgcataaatgagcaaaatatatccatgcatgaaaaaaaatttatataagggagaggaaatcatgcatacagtggatggaggtgga |
31118662 |
T |
|
| Q |
217 |
aaa |
219 |
Q |
| |
|
||| |
|
|
| T |
31118661 |
aaa |
31118659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University